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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-06 04:39:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

OL1914F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1914, mRNA sequence.
EH415569.1:558-577
CTGAGAAAGACTGTAGCGTAATACTCTTTG558TACTGATCATGCTCCTTCAGCCACGCATCTCCCAACTGATCTCCGATCCT
TSA: Raphanus sativus RS19069 mRNA sequence.
JT803616.1:590-609
CTAAGGAAGACGGTGGCGTAATACTCTTTG590TACTGATCATGCTCCTTCAGCCACGAGTCTCCCAGCTTATCTCCTATCCT
BONEE44TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONEE44, genomic survey sequence.
BZ468003.1:796-815
CTGAGAAAGACTGTAGCGTAATACTCTTTG796TACTGATCATGCTCCTTCAGCCACGCATCTCCCAACTGATCTCCCGATCT
Zea mays cultivar B73 chromosome 5 clone CH201-43D11, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.
AC197913.5:180465-180484
CTCTCATGCTCCTCCGTCTCCTCCTCCTAC180465TACTGATCATGCTCCTTCAGATGATCAAGACTTCGTTGCAGCCTTCACCA
Zea mays cultivar B73 chromosome 5 clone CH201-433P6, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.
AC205246.5:34213-34232
CTCTCATGCTCCTCCGTCTCCTCCTCCTAC34213TACTGATCATGCTCCTTCAGATGATCAAGACTTCGTTGCAGCCTTCACCA
Zea mays cultivar LT2357 chromosome 5.
CP116743.1:192175315-192175334
CTCTCATGCTCCTCCGTCTCCTCCTCCTAC192175315TACTGATCATGCTCCTTCAGATGATCAAGACTTCGTTGCAGCCTTCACCA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:9014785-9014804
CTAAGGAAGACGGTAGCGTAATACTCTTTG9014785TACTGATCATGCTCCTTCAGCCAGGAGTCTCCTAACTGATCTCCAATCCT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:52328711-52328730
CTGAGAAAGACTGTAGCGTAATACTCTTTG52328711TACTGATCATGCTCCTTCAGCCACGCATCTCCCAACTGATCTCCGATCCT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:4808254-4808273
CTAAGGAAGACGGTAGCGTAATACTCCTTG4808254TACTGATCATGCTCCTTCAGCCAGGAGTCTCCTAACTGATCACCAATCCT
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:40446215-40446234
CTAAGGAAGACGGTGGCGTAATACTCTTTG40446215TACTGATCATGCTCCTTCAGCCACGAGTCTCCCAGCTTATCTCCTATCCT
Sequence 179381 from Patent WO2014036048.
JC929006.1:154-173
TGGTGAAGGCTGCAACGAAGTCTTGATCAT154CTGAAGGAGCATGATCAGTAGTAGGAGGAGGAGACGGAGGAGCATGAGAG
OL1914R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL1914, mRNA sequence.
EH415571.1:491-510
AGGATCGGAGATCAGTTGGGAGATGCGTGG491CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACAGTCTTTCTCAG
BNAEN1GH_UP_049_G04_21JUL2006_020 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES989988.1:184-203
AGGATCGGAGATCAGTTGGGAGATGCGTGG184CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTTCTCAG
BNSCS2CT_UP_277_D06_04MAY2007_042 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV035960.1:37-56
AGGATCGGAGATCAGTTGGGAGATGCGTGG37CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTTCCCAG
BNSCS5CT_UP_100_A02_29MAY2007_016 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV084792.1:73-92
AGGATTGGTGATCAGTTAGGAGACTCCTGG73CTGAAGGAGCATGATCAGTACAAGGAGTATTACGCTACCGTCTTCCTTAG
BR043195 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-045B04 5', mRNA sequence.
EX058551.1:565-584
AGGATTGGAGATCAGTTAGGAGACTCCTGG565CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
RS3GZ21TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD957696.1:49-68
AGGATTGGAGATCAGTTAGGAGATTCATGG49CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_25872.
FX670270.1:1286-1305
AGGATAGGAGATAAGCTGGGAGACTCGTGG1286CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCCACCGTCTTCCTTAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14295.
FX696922.1:1814-1833
AGGATTGGAGATCAGTTAGGAGACTCCTGG1814CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_28774.
FX699562.1:717-736
AGGATCGGAGATCAGTTGGGAGACTCCTGG717CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTTAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_43773.
FX744776.1:565-584
AGGATAGGAGATAAGCTGGGAGACTCGTGG565CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCCACCGTCTTCCTTAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_75318.
FX761079.1:276-295
AGGATCGGAGATCAGTTGGGAGACTCCTGG276CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTTAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_52531.
FX762939.1:274-293
AGGATTGGAGATCAGTTAGGAGACTCCTGG274CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
Brassica rapa subsp. pekinensis clone KBrB112K04, complete sequence.
FP340381.1:6681-6700
AGGATTGGAGATCAGTTAGGAGACTCCTGG6681CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
AC189217.2:92214-92233
AGGATCGGAGATCAGTTGGGAGACTCCTGG92214CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTTAG
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:3066732-3066751
AGGATCGGAGATCAGTTGGGAGACTCCTGG3066732CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTTAG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:3030057-3030076
AGGATCGGAGATCAGTTGGGAGACTCCTGG3030057CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTCAG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:4004408-4004427
AGGATCGGAGATCAGTTGGGAGATGCGTGG4004408CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACAGTCTTTCTCAG
Brassica napus genome assembly, chromosome: C03.
HG994367.1:69383862-69383881
AGGATTGGTGATCAGTTAGGAGACTCCTGG69383862CTGAAGGAGCATGATCAGTACAAGGAGTATTACGCTACCGTCTTCCTTAG
Brassica rapa genome, scaffold: A01.
LR031571.1:2989491-2989510
AGGATCGGAGATCAGTTGGGAGACTCCTGG2989491CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTCAG
Brassica rapa genome, scaffold: A08.
LR031575.1:16425327-16425346
AGGATTGGAGATCAGTTAGGAGACTCCTGG16425327CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:69123930-69123949
AGGATTGGTGATCAGTTAGGAGACTCCTGG69123930CTGAAGGAGCATGATCAGTACAAGGAGTATTACGCTACCGTCTTCCTTAG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:3990028-3990047
AGGATCGGAGATCAGTTGGGAGATGCGTGG3990028CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACAGTCTTTCTCAG
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:3171921-3171940
AGGATAGGAGATAAGCTGGGAGACTCGTGG3171921CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCCACCGTCTTCCTTAG
Zea mays genome assembly, chromosome: 5.
LR897971.1:30244074-30244093
TGGTGAAGGCTGCAACGAAGTCTTGATCAT30244074CTGAAGGAGCATGATCAGTAGTAGGAGGAGGAGACGGAGGAGCATGAGAG
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:2990209-2990228
AGGATCGGAGATCAGTTGGGAGACTCCTGG2990209CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACGGTCTTCCTCAG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:22249786-22249805
AGGATTGGAGATCAGTTAGGAGACTCCTGG22249786CTGAAGGAGCATGATCAGTACAAAGAGTATTACGCTACCGTCTTCCTTAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TACTGATCATGCTCCTTCAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TACTGATCATGCTCCTTCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.192 | 0.183 | search_plus_done; http://172.18.8.135:50400/match?q=TACTGATCATGCTCCTTCAG&k=0&no_gap=0&offset=0&limit=50
0.711 | 0.519 | search_minus_done; http://172.18.8.135:50400/match?q=CTGAAGGAGCATGATCAGTA&k=0&no_gap=0&offset=0&limit=40
0.729 | 0.018 | cgi_end;

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