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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-07 13:55:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 2.
OU383774.1:94247848-94247867
CAACAGCAGAATTTCATTACTCAGGACTCT94247848TCAAAGCTCCAAATTTGTTTCCAATTTACACTTTGCAGTTGGCTTTTTCT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39994340-39994359
TTTTTTATTTCAATTAAATTTTAGCCAACA39994340TCAAAGCTCCAAATTTGTTTGAAAAATGTATGAAAACACAAACAACAACT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36687765-36687784
TTTTTTATTTCAATTAAATTTTAGCCAACA36687765TCAAAGCTCCAAATTTGTTTGAAAAATGTATGAAAACACTAATAACAACT
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40292226-40292245
TTTTTTATTTCAATTAAATTTTAGCCAACA40292226TCAAAGCTCCAAATTTGTTTGAAAAATGTATGAAAACACAAACAACAACT
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39608467-39608486
TTTTTTATTTCAATTAAATTTTAGCCAACA39608467TCAAAGCTCCAAATTTGTTTGAAAAATGTATGAAAACACAAACAACTTGA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40448662-40448681
TTTTTTATTTCAATTAAATTTTAGCCAACA40448662TCAAAGCTCCAAATTTGTTTGAAAAATGTATGAAAACACAAACAACAACT
Hymenolepis microstoma genome assembly, chromosome: 5.
LR215993.1:3271454-3271473
CATTAATGAAATTTTAAACGAAATTACATC3271454TCAAAGCTCCAAATTTGTTTGCCAATTTTTCTACGTGGTAGGAAGGCAAC
Nowickia ferox genome assembly, chromosome: 4.
OW387026.1:19683135-19683154
AGGGATTAATTAAATTTTAGATACAAGTTT19683135TCAAAGCTCCAAATTTGTTTTTATACAAAAAAAAAAAAGAGCAAAAGCTC
Oegoconia quadripuncta genome assembly, chromosome: 13.
OX438754.1:2473117-2473136
GTTAATCATATGTACCAATTCCTGCGATTT2473117TCAAAGCTCCAAATTTGTTTTTTATTTGGATTAACCTTTGGTTAAACCTT
Chalcis sispes genome assembly, chromosome: 6.
OX465099.1:25801323-25801342
TTACTTATGGTTCCATCGGCATTATTATAG25801323TCAAAGCTCCAAATTTGTTTCGATTGCGAATCAATGTAATACATAACATC
Ferdinandea cuprea genome assembly, chromosome: 2.
OY754959.1:40678902-40678921
TATAAGAGTATAGAGGAAATTTATAATAGC40678902TCAAAGCTCCAAATTTGTTTAGAGATTCTACAACACTCTTGTTTATTTTC
Meles meles genome assembly, chromosome: 2.
OV277442.1:127954841-127954860
TCCCCTATAATAACAATTTAATCATTATAA127954841AAACAAATTTGGAGCTTTGAATACAAAGGAGAACTAACTAGGCAAAAATT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:6614534-6614553
AGTTGTTGTTTGTGTTTTCATACATTTTTC6614534AAACAAATTTGGAGCTTTGATGTTGGCTAAAATTTAATTGAAATAAAAAA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6831709-6831728
TCAAGTTGTTTGTGTTTTCATACATTTTTC6831709AAACAAATTTGGAGCTTTGATGTTGGCTAAAATTTAATTGAAATAAAAAA
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6770179-6770198
AGTTGTTGTTTGTGTTTTCATACATTTTTC6770179AAACAAATTTGGAGCTTTGATGTTGGCTAAAATTTAATTGAAATAAAAAA
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6538274-6538293
AGTTGTTGTTTGTGTTTTCATACATTTTTC6538274AAACAAATTTGGAGCTTTGATGTTGGCTAAAATTTAATTGAAATAAAAAA
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5338149-5338168
TCAAGTTGTTTGTGTTTTCATACATTTTCC5338149AAACAAATTTGGAGCTTTGATGTTGGTTAAAATTTAATTGAAATAAAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCAAAGCTCCAAATTTGTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAAAGCTCCAAATTTGTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=TCAAAGCTCCAAATTTGTTT&k=0&no_gap=0&offset=0&limit=50
0.139 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=AAACAAATTTGGAGCTTTGA&k=0&no_gap=0&offset=0&limit=39
0.143 | 0.004 | cgi_end;

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