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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-04 16:43:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Onychomys torridus genome assembly, chromosome: 5.
LR877192.1:120744265-120744282
TATAGATTTTGTGCAAATGTTACAACACCC120744265TCAATCCAATGTCCAGGTTTTCTTTAATTTATTGCTTCTTATTTCTTA
Heterocephalus glaber genome assembly, chromosome: X.
OX090938.1:108662884-108662901
AAATACTGCAATTTGGTTAAAAAAAAAAAG108662884TCAATCCAATGTCCAGGTCACGGGGCCATCTCTACCAGTTTAGTGTTT
Heterocephalus glaber genome assembly, chromosome: X.
OX090970.1:108662884-108662901
AAATACTGCAATTTGGTTAAAAAAAAAAAG108662884TCAATCCAATGTCCAGGTCACGGGGCCATCTCTACCAGTTTAGTGTTT
Onychomys arenicola genome assembly, chromosome: 5.
OX460351.1:121271594-121271611
TATAGATTTTGTGCAAATGTTACAACACCC121271594TCAATCCAATGTCCAGGTTTTCTTTAATTTATTGCTTCTTATTTCTTA
Onychomys torridus genome assembly, chromosome: 5.
OX460886.1:120744265-120744282
TATAGATTTTGTGCAAATGTTACAACACCC120744265TCAATCCAATGTCCAGGTTTTCTTTAATTTATTGCTTCTTATTTCTTA
Heterocephalus glaber genome assembly, chromosome: X.
OZ001095.1:35778884-35778901
AAATACTGCAATTTGGTTAAAAAAAAAAAG35778884TCAATCCAATGTCCAGGTCACGGGGCCATCTCTACCAGTTTAGTGTTT
Heterocephalus glaber genome assembly, chromosome: X.
OZ001138.1:35612884-35612901
AAATACTGCAATTTGGTTAAAAAAAAAAAG35612884TCAATCCAATGTCCAGGTCACGGGGCCATCTCTACCAGTTTAGTGTTT
Ovis canadensis canadensis isolate 43U chromosome 18 sequence.
CP011903.1:22417313-22417330
TTTACCCAGGACGCTTTAAAACTCTTTTTT22417313TCAATCCAATGTCCAGGTCCWCAAAAAAGGACCGGAAGTGTGGGGTCA
Bos taurus genome assembly, chromosome: 28.
LR962759.1:3019258-3019275
TTTACCCAGGACACTTTAAAACTTTTTTTT3019258TCAATCCAATGTCCAGGTCTTCAGAAAAGGCCGGGAGGTGTGGGGCCA
Cervus elaphus genome assembly, chromosome: 13.
OU343090.1:26721023-26721040
TACCCAAGACCCTTTAAAACTTTTTTTTTT26721023TCAATCCAATGTCCAGGTCCTCAGAAAAGGCCCAGAGGTGTGGGGCCA
Bos gaurus x Bos taurus genome assembly, chromosome: 28.
OX258982.1:3105748-3105765
TTTACCCAGGACACTTTAAAACTTTTTTTT3105748TCAATCCAATGTCCAGGTCTTCAGAAAAGGCCAGGAGGTGTGGGGCCA
Bos taurus strain mammals genome assembly, chromosome: 28.
OX344717.1:3809058-3809075
TTTACCCAGGACACTTTAAAACTTTTTTTT3809058TCAATCCAATGTCCAGGTCTTCAGAAAAGGCCAGGAGGTGTGGGGCCA
Bos taurus genome assembly, chromosome: Bta28.
OY997256.1:13069534-13069551
TTTACCCAGGACACTTTAAAACTTTTTTTT13069534TCAATCCAATGTCCAGGTCTTCAGAAAAGGCCGGGAGGTGTGGGGCCA
Muntiacus reevesi genome assembly, chromosome: 3.
OZ005626.1:268787822-268787839
TTACCCAGGACCCTTTAAAACTTTTTTTTT268787822TCAATCCAATGTCCAGGTCCTCAGAAAAGGCCTGGAGATGTGGGGCCA
Muntiacus reevesi genome assembly, chromosome: 15.
OZ005639.1:21657202-21657219
TACCTAGAACCCTTTAAAACTTTTTTTTTT21657202TCAATCCAATGTCCAGGTCTTCAGAAAAGGCCCAGAGGTGTGGGGCCA
Rana temporaria genome assembly, chromosome: 2.
LR991681.1:248771958-248771975
CTTTAAAGAATCTTGGCAGGTATGAAGTCT248771958TCAATCCAATGTCCAGGTCTTACTAAACTGATGAAGTGGGTACAGCTG
Vipera ursinii genome assembly, chromosome: 1.
OX365964.1:127953667-127953684
TGTCAGATGGCTAACCTATATCAACCAATT127953667TCAATCCAATGTCCAGGTGCTAGAAAATAACAAAATACCAGTTTAGTT
Desulfosarcinaceae bacterium isolate d8a7a971-57cf-42a0-aaa7-90f8cedb306c genome assembly, chromosome: 4.
OY776405.1:2370533-2370550
GGACGGCGAGGATGAAAAAAAAGCGGCGGC2370533TCAATCCAATGTCCAGGTGGTTTTCGTTTCCGACGAAAAAAAAGTTGC
uncultured Saccharofermentans sp. isolate 009b34df-6986-4c74-874c-2c53a54848ac genome assembly, chromosome: 1.
OY782521.1:101711-101728
TTCTGATCAGGCAATAACCCAATTAGCTGG101711TCAATCCAATGTCCAGGTTCTGGTTTTTTCGGATTCCCATGGACAGTG
24RDBNH_UP_002_A03_19DEC2003_031 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN729868.1:512-529
TGATTCCCCTCCTCCAAATATGACTTATGC512TCAATCCAATGTCCAGGTATTGGTACAGAATCTTACCTTGTGCAGCCT
24RDBNH_UP_021_F10_12JAN2004_070 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
CN731651.1:575-592
TGATTCCCCTCCTCCAAATATGACTTATGC575TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTTGTGCAGC
Brassica oleracea var. viridis mRNA, clone: KALE-085A05, 5' end sequence.
DK488055.1:509-526
TGATTCCCCTCCTCCAAATATGACTTATGC509TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
Brassica oleracea var. viridis mRNA, clone: KALE-122O04, 5' end sequence.
DK502542.1:572-589
TGATTCCCCTCCTCCAAATATGACTTATGC572TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTGTGCAGCCT
Brassica oleracea var. viridis mRNA, clone: KALE-136N19, 5' end sequence.
DK507889.1:572-589
TGATTCCCCTCCTCCAAATATGACTTATGC572TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
Brassica oleracea var. viridis mRNA, clone: KALE-085A05, 3' end sequence.
DK547641.1:98-115
TGATTCCCCTCCTCCAAATATGACTTATGC98TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
Brassica oleracea var. viridis mRNA, clone: KALE-122O04, 3' end sequence.
DK562107.1:55-72
TGATTCCCCTCCTCCAAATATGACTTATGC55TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTGTGCAGCCT
Brassica oleracea var. viridis mRNA, clone: KALE-136N19, 3' end sequence.
DK567447.1:64-81
TGATTCCCCTCCTCCAAATATGACTTATGC64TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
BNYS8DCT_UP_010_C02_19APR2005_012 Brassica napus seeds BNYS8DCT Brassica napus cDNA 5', mRNA sequence.
EE481233.1:568-585
TGATTCCCCTCCTCCAAATATGACTTATGC568TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
9RDBNGAR_UP_017_F04_27OCT2003_022 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES950268.1:572-589
TGATTCCCCTCCTCCAAATATGACTTATGC572TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
0097718 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV196565.1:595-612
TGATTCCCCTCCTCCAAATATGACTTATGC595TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
RS2AN71TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW724397.1:8-25
GCTACGC8TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
BR034568 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-053A07 5', mRNA sequence.
EX049924.1:249-266
TGATTCCCCTCCTCCAAATATGACTTATGC249TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
BR034865 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-056H07 5', mRNA sequence.
EX050221.1:193-210
TGATTCCCCTCCTCCAAATATGACTTATGC193TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
BR036462 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-078E09 5', mRNA sequence.
EX051818.1:248-265
TGATTCCCCTCCTCCAAATATGACTTATGC248TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
BR077559 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-086D03 5', mRNA sequence.
EX091269.1:600-617
TGATTCCCCTCCTCCAAATATGACTTATGC600TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
BR080092 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-140C09 5', mRNA sequence.
EX093802.1:585-602
TGATTCCCCCCCTCCAAATATGACTTATGC585TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
BR081552 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-013E07 5', mRNA sequence.
EX095262.1:536-553
TGATTCCCCTCCTCCAAATATGACTTATGC536TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
BR095934 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-050A11 5', mRNA sequence.
EX109644.1:565-582
TGATTCCCCTCCTCCAAATATGACTTATGC565TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
RR2BK45TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX754009.1:657-674
TGATTCCCCTCCTCCCAATATGACCTATGC657TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGC
RS1FN66TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD564420.1:556-573
TGATTCCCCTCCTCCCAATATGACCTACGC556TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
RR2H652TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD973857.1:618-635
ATTGATTCCCCCTCCCAATATGACCTATGC618TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGC
Raphanus sativus mRNA, clone: RSCS18E07, 5' end sequence.
FY452245.1:595-612
TGATTCCCCTCCTCCCAATATGACCTACGC595TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
CCZA11071.b1 CCZA Tetranychus urticae London larvae normalized Tetranychus urticae cDNA clone CCZA11071 5', mRNA sequence.
GW024650.1:123-140
CTTAATGCTCAATATGACGTTCCATCAGAC123TCAATCCAATGTCCAGGTGAAGGTTTGTACGCTGCTGCTCATCAAACT
CCZB4970.b1 CCZB Tetranychus urticae London adult normalized Tetranychus urticae cDNA clone CCZB4970 5', mRNA sequence.
GW043363.1:112-129
CTTAATGCTCAATATGACGTTCCATCAGAC112TCAATCCAATGTCCAGGTGAAGGTTTGTACACTGCTGCTCATCAAACT
CCZB12464.b1 CCZB Tetranychus urticae London adult normalized Tetranychus urticae cDNA clone CCZB12464 5', mRNA sequence.
GW057081.1:238-255
CTTAATGCTCAATATGACGTTCCATCAGAC238TCAATCCAATGTCCAGGTGAAGGTTTGTACACTGTTGCTCATCAAACT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4976.
FX743412.1:664-681
TGATTCCCCTCCTCCCAATATGACCTACGC664TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
TSA: Tetranychus urticae Tu-Houten1_isotig04681 mRNA sequence.
JR694870.1:597-614
CTTAATGCTCAATATGACGTTCCATCAGAC597TCAATCCAATGTCCAGGTGAAGGTTTATACACTGCTGCTCATCAAACT
TSA: Raphanus sativus RS21992 mRNA sequence.
JT806539.1:574-591
TGATTCCCCTCCTCCCAATATGACCTACGC574TCAATCCAATGTCCAGGTATTGGTACAGAATCTTAGCTTTGTGCAGCC
Raphanus sativus DNA, clone: RSDH27J07_RP-2.
GA886699.1:22-39
CTCCTCCCATATGACCTACGC22TCAATCCAATGTCCAGGTTTGGCCTTACTACAGCTAAATTGTATTGCT
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-64C10.
CU929543.2:134952-134969
GTCTACCCACCTCCCCTCCCTCCCCTTCCT134952TCAATCCAATGTCCAGGTTGCTGCCAGAGGGGACTGTCTCAAAAGCAA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-254J12.
FP102305.3:80042-80059
GTCTACCCACCTCCCCTCCCTCCCCTTCCT80042TCAATCCAATGTCCAGGTTGCTGCCAGAGGGGACTGTCTCAAAAGCAA
Setaria viridis cultivar ME034v chromosome 7.
CP050801.1:2705713-2705730
CACTGCACATCAACAACGACAGCCTCTTGA2705713TCAATCCAATGTCCAGGTGCAGATGATGGCGAATCAGCAAGGTTTGGG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24761189-24761206
TGATTCCCCTCCTCCAAATATGACTTATGC24761189TCAATCCAATGTCCAGGTTAGCATCAACAACACTGTCTTGTTAAAGAT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:59307293-59307310
AGATTCACCTCCTGCCAATGTCACCTATCC59307293TCAATCCAATGTCCAGGTGAATTTTCAAAAGAAAAAACAAGAACTTGA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:23515453-23515470
AGATTCACCTCCTCCCAATGTCACCTATCC23515453TCAATCCAATGTCCAGGTGAATTTTTTTAAATTAAAAACAAGAAGTTG
Aegilops umbellulata cultivar TA1851 chromosome 5U.
CP136058.1:562502764-562502781
CAAGGATGCCTACGATGCCAGCTCTGCTCT562502764TCAATCCAATGTCCAGGTGAGTTGATTTCCGACTTATCTTTGAGCTTG
Aegilops umbellulata cultivar TA1851 chromosome 5U.
CP136058.1:562530523-562530540
CAAGGATGCCTACGATGCCAGCTCTGCTCT562530523TCAATCCAATGTCCAGGTGAGTTGATTTCGGACTGATCTTTCAGCTTG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:24900737-24900754
TGATTCCCCTCCTCCAAATATGACTTATGC24900737TCAATCCAATGTCCAGGTTAGCATCAACAAACAGTTTTGTTTGCTTGT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:44051773-44051790
AGATTCACCTCCTGCCAATGTCACCTATCC44051773TCAATCCAATGTCCAGGTGAATTTTCAAAAGAAAAAACAAGAACTTGA
Brassica napus genome assembly, chromosome: C07.
HG994371.1:48615504-48615521
TGATTCCCCTCCTCCAAATATGACTTATGC48615504TCAATCCAATGTCCAGGTTAGCATTTTTCTCCTTCAGTTTTGTTTGCT
Brassica rapa genome, scaffold: A06.
LR031569.1:54225895-54225912
AGATTCACCTCCTGCCAATGTCACCTATCC54225895TCAATCCAATGTCCAGGTGAATTTTCAAAAGAAAAAACAAGAACTTGA
Brassica rapa genome, scaffold: A03.
LR031572.1:24387010-24387027
TGATTCCCCTCCTCCAAATATGACTTATGC24387010TCAATCCAATGTCCAGGTTAGCATCAACAACACTGTCTTGTTAAAGAT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:51380546-51380563
TGATTCCCCTCCTCCAAATATGACTTATGC51380546TCAATCCAATGTCCAGGTTAGCATTTTTCTCCTTCAGTTTTGTTTGCT
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:47992310-47992327
TGATTCCCCTCCTCCCAATATGACCTACGC47992310TCAATCCAATGTCCAGGTTTGGCCTTACTACAGCTAAATTGTATTGCT
Triticum aestivum genome assembly, chromosome: 6A.
LR865473.1:13146744-13146761
CAAGGCTGCCTATGATGCCAGCTCTGCAAT13146744TCAATCCAATGTCCAGGTGAGTTGATTTCCGTCTGATCTTTGCTCTTC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24514852-24514869
TGATTCCCCTCCTCCAAATATGACTTATGC24514852TCAATCCAATGTCCAGGTTAGCATCAACAACACTGTCTTGTTAAAGAT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:57856444-57856461
AGATTCACCTCCTGCCAATGTCACCTATCC57856444TCAATCCAATGTCCAGGTGAATTTTCAAAAGAAAAAACAAGAACTTGA
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:11582365-11582382
AGATTCGACTCCTACGAACGTGGCGTATCT11582365TCAATCCAATGTCCAGGTGACCTTTTAAACAAAAAAAGAGCTTGAGTG
Bromus sterilis genome assembly, chromosome: 1.
OX465595.1:206478959-206478976
TCAAGATAATTATGCCTCGGTGGCACACCC206478959TCAATCCAATGTCCAGGTCGAACGAGCCAATGGACTGATATTGAAGGG
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737878.1:103701012-103701029
CCGGCTCGACTTGGCATCAGTGGCCCACCC103701012TCAATCCAATGTCCAGGTGGAAAGGGCCAACGGCCTGATCCTGGTAGG
Draba incana genome assembly, chromosome: 2.
OY755203.1:21509760-21509777
TTCATGTTTTTAAGAAACTGTTTATTATCC21509760TCAATCCAATGTCCAGGTGATCTTTGAATAGGAATTGACTGTTGACAA
3_Tms_b3v08.
OB792640.1:795223-795240
CATAGGCCTGCTAGGCCCAACGTTTCAAGT795223TCAATCCAATGTCCAGGTATCAGTTTTCAATGTATATAATATTATTAA
3_Tce_b3v08.
OC434315.1:157-174
CATAGGCCTGCTAGGCCCAACGTTTCAAGT157TCAATCCAATGTCCAGGTATCAGTTTTCAATGTGTATAATATTATTAA
Gymnoscelis rufifasciata genome assembly, chromosome: 29.
OV815331.1:1870993-1871010
AATTAAAAAATGCTATTGTAGGTGGTCAGC1870993TCAATCCAATGTCCAGGTACCGCGTGGCTATAGGCATTTATTTCAAAG
Lapara coniferarum genome assembly, chromosome: 3.
OX438921.1:4273571-4273588
CGATGTAAACGACACAATTCCCTGTTAACA4273571TCAATCCAATGTCCAGGTAAACACAATTGACGTCAAAATTATTATGAC
Amaurobius ferox genome assembly, chromosome: 1.
OX578134.1:110968399-110968416
CTCTCCAATGTATTGAACAGACACCCTCTG110968399TCAATCCAATGTCCAGGTTTACTTCTGAGAACACGAGTTCCTATTCAA
Pasiphila rectangulata genome assembly, chromosome: 3.
OY720238.1:16349567-16349584
TCATTGGCAAGAATTTTAGGATTGTGAAGC16349567TCAATCCAATGTCCAGGTCCCGAAATCACTAAGTGCTCTGCTATCACT
Pasiphila rectangulata genome assembly, chromosome: 17.
OY720252.1:15273172-15273189
TCATTGGCAAGAATTTTAGGATTGTGAAGC15273172TCAATCCAATGTCCAGGTCCCGAATCCACTAGGTGTTCTGCTATCGCT
Sepiola atlantica genome assembly, chromosome: 16.
OY744530.1:12720144-12720161
CAAACACATCCGTACTCCACCTTTTCACCC12720144TCAATCCAATGTCCAGGTTGAACGTTTTGTGGATACATTTAATAGAGC
Pseudeuparius sepicola genome assembly, chromosome: 10.
OY987308.1:10572106-10572123
CTGATGCGTGGATGTCTTTGAAGAAAAACT10572106TCAATCCAATGTCCAGGTCTTCCATCGGCAAATTTGTTTGGACGTTTT
Onchidella celtica genome assembly, chromosome: 2.
OZ007568.1:60392345-60392362
AACCTCATAAATCATGTGATAAATATCTTG60392345TCAATCCAATGTCCAGGTTAGATTGATCTTATGCTGGACCAAAGAGGC
Phaonia tiefii genome assembly, chromosome: 1.
OZ008367.1:353181359-353181376
TTTTCTTCGCCAAATGCAATCGTTTTTAAT353181359TCAATCCAATGTCCAGGTATGAATAATATTCACGCTGTGATCCGGTGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCAATCCAATGTCCAGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCAATCCAATGTCCAGGT | format : html | download : | debug :

0.009 | 0.009 | search_start;
1.646 | 1.637 | search_plus_done; http://172.18.8.135:50400/match?q=TCAATCCAATGTCCAGGT&k=0&no_gap=0&offset=0&limit=50
1.730 | 0.085 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTGGACATTGGATTGA&k=0&no_gap=0&offset=0&limit=0
1.730 | 0.000 | cgi_end;

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