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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:47:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_733.
FX660703.1:990-1009
ACAGAGCACCAACAAAGGACACAACAAAGA990TCCCACTCCAACTCCATAGCTCAAGTGTTGAAAATGGTGAAGGTTTTGAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_36482.
FX745114.1:152-171
ACAGAGCACCAACAAAGGACACAACAAAGA152TCCCACTCCAACTCCATAGCTCAAGTGTTGAAAATGGTGAAGGTTTTGAC
TSA: Raphanus sativus RS23528 mRNA sequence.
JT808075.1:859-878
ACAGAGCACCAACAAAGGACACAACAAAGA859TCCCACTCCAACTCCATAGCTCAAGTGTTGAAAATGGTGAAGGTTTTGAC
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 1.
CP094631.1:21193976-21193995
ACAGAGCACCAACAAACGACACAACAAAGA21193976TCCCACTCCAACTCCATAGCTCAACTGTTGAAAATGGGGATGGTTTTGCC
Camelina sativa cultivar CO46 chromosome 17.
CP131547.1:22835992-22836011
ACAGAGCACCAACAAACGACACAACAAAGA22835992TCCCACTCCAACTCCATAGCTCAAGTGTTGAAAATGGGGATGGTTTTGCC
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:15322269-15322288
ACAGAGCACCAACAAAGGACACAACAAAGA15322269TCCCACTCCAACTCCATAGCTCAAGTGTTGAAAATGGTGAAGGTTTTGAC
Catocala nupta genome assembly, chromosome: 3.
OY776081.1:32420653-32420672
ATCACTCCTATCCACCAAATCTACTCGTAC32420653TCCCACTCCAACTCCATAGCTAGCTATATAATAGTCAACGTACAATCTAT
RR4A992TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV566312.1:400-419
GTCAAAACCTTCACCATTTTCAACACTTGA400GCTATGGAGTTGGAGTGGGATCTTTGTTGTGTCCTTTGTCGGTGCTCTGT
RS1AS87TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW718070.1:739-758
CTATGTCAAACCTTCACCATTTCACACTGA739GCTATGGAGTTGGAGTGGGATCTTTGTGTGTCCTTGTTGGTGCTCTGTTT
Raphanus sativus mRNA, clone: RSCL14I22, 5' end sequence.
FY437702.1:703-722
GTCAAAACCTTCACCATTTTCAACACTTGA703GCTATGGAGTTGGAGTGGGATCTTTGTTGTGTCCTTTGTTGGTGCTCTGT
Raphanus sativus mRNA, clone: RSCS09I24, 5' end sequence.
FY449141.1:85-104
GTCAAAACCTTCACCATTTTCAACACTTGA85GCTATGGAGTTGGAGTGGGATCTTTGTTGTGTCCTTTGTTGGTGCTCTGT
Raphanus sativus mRNA, clone: RSCS21J01, 5' end sequence.
FY453445.1:89-108
GTCAAAACCTTCACCATTCTCAACACTTGA89GCTATGGAGTTGGAGTGGGATCTTTGTTGTGTCCTTTGTTGGTGCTCTGT
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:17839890-17839909
GTCAAAACCTTCACCATTTTCAACACTTGA17839890GCTATGGAGTTGGAGTGGGATCTTTGTTGTGTCCTTTGTTGGTGCTCTGT
Barbarea vulgaris genome assembly, chromosome: 3.
OY763889.1:18426943-18426962
GGCAAAACCTTCTCCATTTTCAACACTTGA18426943GCTATGGAGTTGGAGTGGGATCTTTGTTGTTTCATTTGTTGGTGCTCTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TCCCACTCCAACTCCATAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TCCCACTCCAACTCCATAGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.114 | 0.106 | search_plus_done; http://172.18.8.135:50400/match?q=TCCCACTCCAACTCCATAGC&k=0&no_gap=0&offset=0&limit=50
0.460 | 0.345 | search_minus_done; http://172.18.8.135:50400/match?q=GCTATGGAGTTGGAGTGGGA&k=0&no_gap=0&offset=0&limit=43
0.464 | 0.005 | cgi_end;

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