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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 05:45:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Ipomoea nil cDNA clone:jm2c10, 3' end, single read.
BJ568359.1:518-537
TGTAGTTTTTAGCTTCATTATCATCTCCCA518TGAACCGCAAGAATGCTATGTAAACTGGTGCCATCCCCAACTGAAATGCT
Ipomoea nil cDNA clone:jmsf40g05, 3' end.
CJ770594.1:552-571
TGTAGTTTTTAGCTTCATTATCATCTCCCA552TGAACCGCAAGAATGCTATGTAAACTGGTGCCATCCCCAACTGAAATGCT
Ipomoea nil mRNA, clone: jm44n03, 3' end sequence, expressed in flower and flower bud, cultivar: Tokyo-kokei standard.
HY920272.1:565-584
TGTAGTTTTTAGCTTCATTATCATCTCCCA565TGAACCGCAAGAATGCTATGTAAACTGGTGCCATCCCCAACTGAAATGCT
TSA: Ipomoea batatas Contig_19528.Ipbalsr mRNA sequence.
JP124116.1:426-445
TATAGTTTTTAGCCTCGTTGTCATCACCCA426TGAACCGCAAGAATGCTATGTAAACTGGCGCCATCCCTAACTGAAATGCT
TSA: Pyrus x bretschneideri Unigene63702_XinShao mRNA sequence.
JR651299.1:394-413
TGTAGTTCTTTGCCTCGTTATCATCACCCA394TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:34347851-34347870
TGTAGTTCTTTGCCTCGTTATCATCACCCA34347851TGAACCGCAAGAATGCTATGTAGACGGGAGCCATCCCGAGCTGGAAAGCT
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:33037240-33037259
TGTAGTTCTTTGCCTCGTTATCATCACCCA33037240TGAACCGCAAGAATGCTATGTAGACGGGAGCCATCCCGAGCTGGAAAGCT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:32782307-32782326
TGTAGTTCTTGGCCTCGTTATCATCACCCA32782307TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:33162344-33162363
TGTAGTTCTTGGCCTCGTTATCATCACCCA33162344TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:35251442-35251461
TGTAGTTCTTGGCCTCATTATCATCACCCA35251442TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:33700891-33700910
TGTAGTTCTTGGCCTCGTTATCATCACCCA33700891TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:34714339-34714358
TGTAGTTCTTGGCCTCGTTATCATCACCCA34714339TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:34852994-34853013
TGTAGTTCTTGGCCTCGTTATCATCACCCA34852994TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:34845258-34845277
TGTAGTTCTTGGCCTCGTTATCATCACCCA34845258TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:34657678-34657697
TGTAGTTCTTGGCCTCGTTATCATCACCCA34657678TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus domestica genome assembly, chromosome: 2.
OU744992.1:35267483-35267502
TGTAGTTCTTGGCCTCGTTATCATCACCCA35267483TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:31532093-31532112
TGTAGTTCTTTGCCTCATTATCATCACCCA31532093TGAACCGCAAGAATGCTATGTAGACGGGAGCCATCCCGAGCTGGAAAGCT
Ligustrum vulgare genome assembly, chromosome: 14.
OY743181.1:16779041-16779060
CATAGTTTTTTGCCTCGTTTTCATCACCCA16779041TGAACCGCAAGAATGCTATGTAAACTGGCGCCATTCCGAGCTGAAATGCT
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:24988812-24988831
TGTAGTTCTTGGCCTCGTTATCATCACCCA24988812TGAACCGCAAGAATGCTATGTAGACAGGAGCCATTCCGAGCTGGAAAGCT
Gnaphalium uliginosum genome assembly, chromosome: 5.
OZ005684.1:19682313-19682332
TGAATACCTTGGCTTCGTTGTGCTCACCCA19682313TGAACCGCAAGAATGCTATGTAGCATGGAGTGGTGCCCACAAGAAAAGAT
Mdfr3006l17.y3 Mdfr Malus domestica cDNA clone Mdfr3006l17 5' similar to TR:Q9STN8 Q9STN8 PUTATIVE ZINC FINGER PROTEIN, mRNA sequence.
CO415416.1:206-225
AGCTTTCCAGCTCGGGATGGCTCCTGTCTA206CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Mdfrt3091f20.y1 Mdfrt Malus domestica cDNA clone Mdfrt3091f20 5' similar to TR:O81232 O81232 SEVEN IN ABSENTIA HOMOLOG, mRNA sequence.
CV129208.1:22-41
GCTCGGAATGGCTCCTGTCTA22CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCCAAGAACTACA
Mdfrt3087j15.y1 Mdfrt Malus domestica cDNA clone Mdfrt3087j15 5' similar to TR:O81232 O81232 SEVEN IN ABSENTIA HOMOLOG, mRNA sequence.
CV130098.1:22-41
GCTCGGAATGGCTCCTGTCTA22CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCCAAGAACTACA
Mdfrt3096a23.y2 Mdfrt Malus domestica cDNA clone Mdfrt3096a23 5' similar to TR:Q9SPH2 Q9SPH2 SINAH2 PROTEIN, mRNA sequence.
CV466813.1:22-41
GCTCGGAATGGCTCCTGTCTA22CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCCAAGAACTACA
Mdfrfu3515A04.g1 Apple_EST_Mdfrfu Malus domestica cDNA 5' similar to dbj|BAC15488.1| similar to RING zinc finger protein [Oryza sativa (japonica cultivar-group)] dbj|BAC16053.2| similar to RING zinc f
GO537596.1:318-337
AGCTTTCCAGCTCGGAATGGCTCCTGTCTA318CATAGCATTCTTGCGGTTCATGGGTGATGATAATGAGGCCAAGAACTACA
TSA: Pyrus communis mRNA, contig: lc9552.
FX618137.1:108-127
AGCCTTCCAGCTCGGGATGGCTCCCGTCTA108CATAGCATTCTTGCGGTTCATGGGAGATGATAACGAGGCAAAGAACTACA
TSA: Pyrus communis mRNA, contig: lc24118.
FX632534.1:60-79
AGCTTTCCAGCTCGGAATGGCTCCTGTCTA60CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCCAAGAACTACA
TSA: Ipomoea batatas Contig_6115.Ipbalsr mRNA sequence.
JP110703.1:1030-1049
AGCATTTCAGTTAGGGATGGCGCCAGTTTA1030CATAGCATTCTTGCGGTTCATGGGAGATGATAATGATGCTAAAAACTACA
Ipomoea trifida cultivar NCNSP0306 chromosome 4.
CP025647.1:3199221-3199240
AGCATTTCAGTTGGGGATGGCACCAGTTTA3199221CATAGCATTCTTGCGGTTCATGGGAGATGATAATGATGCTAAAAACTACA
Ipomoea trifida cultivar NCNSP0306 chromosome 11.
CP025654.1:1257485-1257504
AGCATTTCAGTTAGGGATGGCGCCAGTTTA1257485CATAGCATTCTTGCGGTTCATGGGTGATGACAACGAGGCTAAAAACTATA
Ipomoea triloba cultivar NCNSP0323 chromosome 4.
CP025663.1:3739122-3739141
AGCATTTCAGTTGGGGATGGCACCAGTTTA3739122CATAGCATTCTTGCGGTTCATGGGAGATGATAATGAAGCTAAAAACTACA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:2951609-2951628
AGCTTTCCAGCTCGGAATGGCTCCTGTCTA2951609CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCCAAGAACTACA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:2981831-2981850
AGCTTTCCAGCTCGGAATGGCTCCTGTCTA2981831CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCCAAGAACTACA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:3237403-3237422
AGCTTTCCAGCTCGGGATGGCTCCCGTCTA3237403CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:3235039-3235058
AGCTTTCCAGCTCGGGATGGCTCCCGTCTA3235039CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:3035181-3035200
AGCTTTCCAGCTCGGGATGGCTCCCGTCTA3035181CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:2892959-2892978
AGCTTTCCAGCTCGGGATGGCTCCCGTCTA2892959CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Chrysanthemum makinoi genome assembly, chromosome: 5.
OU343221.1:283512432-283512451
AGCTTTTCTTTTGGGCATGAATCCATGCTA283512432CATAGCATTCTTGCGGTTCATGGGTGAGGAAACCGATGCCAAGACGTTCA
Fraxinus pennsylvanica genome assembly, chromosome: 7.
OU503042.1:22675136-22675155
AGCATTTCAGTTTGGAATGGCGCCAGTTTA22675136CATAGCATTCTTGCGGTTCATGGGCGATGAAAACGAGGCCAAAAACTATG
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:3241117-3241136
AGCTTTCCAGCTCGGGATGGCTCCCGTCTA3241117CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Malus domestica genome assembly, chromosome: 7.
OU696683.1:3185644-3185663
AGCTTTCCAGCTCGGGATGGCTCCTGTCTA3185644CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Malus domestica genome assembly, chromosome: 7.
OU744548.1:3507838-3507857
AGCTTTCCAGCTCGGGATGGCTCCCGTCTA3507838CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Malus domestica genome assembly, chromosome: 7.
OU744959.1:2938983-2939002
AGCTTTCCAGCTCGGGATGGCTCCCGTCTA2938983CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Malus domestica genome assembly, chromosome: 7.
OU744997.1:3118615-3118634
AGCTTTCCAGCTCGGGATGGCTCCTGTCTA3118615CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Scutellaria galericulata genome assembly, chromosome: 12.
OX335795.1:4075826-4075845
GGCGTTCCAGCTGGGAATGGCGCCAGTTTA4075826CATAGCATTCTTGCGGTTCATGGGTGACGACAACGAGGCAAAAAACTACA
Hedera helix genome assembly, chromosome: 17.
OX359280.1:13551114-13551133
AGCATTCCAGCTCGGGATGGCTCCAGTGTA13551114CATAGCATTCTTGCGGTTCATGGGTGATGAAAATGATGCAAAGAAGTACA
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:3040243-3040262
AGCTTTCCAGCTCGGAATGGCTCCTGTCTA3040243CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCCAAGAACTACA
Pseudognaphalium luteoalbum genome assembly, chromosome: 3.
OY730194.1:93969147-93969166
ATCTTTTCTTGTGGGCACCACTCCATGCTA93969147CATAGCATTCTTGCGGTTCATGGGTGAGCACAGCGAAGCCAAGGTATTCA
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:3902186-3902205
AGCTTTCCAGCTCGGGATGGCTCCTGTCTA3902186CATAGCATTCTTGCGGTTCATGGGTGACGATAATGAGGCAAAGAACTACA
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:4169653-4169672
AGCTTTCCAGCTCGGGATGGCTCCCGTCTA4169653CATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCAAAGAACTACA
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:2167098-2167117
AGCTTTCCAGCTCGGGATGGCTCCCGTCTA2167098CATAGCATTCTTGCGGTTCATGGGTGATGATAATGAGGCAAAGAACTACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAACCGCAAGAATGCTATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAACCGCAAGAATGCTATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.263 | 0.254 | search_plus_done; http://172.18.8.135:50400/match?q=TGAACCGCAAGAATGCTATG&k=0&no_gap=0&offset=0&limit=50
0.520 | 0.258 | search_minus_done; http://172.18.8.135:50400/match?q=CATAGCATTCTTGCGGTTCA&k=0&no_gap=0&offset=0&limit=30
0.541 | 0.021 | cgi_end;

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