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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 07:09:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus pyrifolia mRNA, clone: NFR1_02_05, 3' end sequence, expressed in fruit.
HX739081.1:213-232
CTCCCCGAATTCATAGTCATTTGGAAGTAT213TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
TSA: Pyrus x bretschneideri Unigene966_XinShao mRNA sequence.
JR596366.1:472-491
CTCCCCGAATTCATAGTCATTTGGTAGTAT472TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
TSA: Pyrus x bretschneideri Unigene4986_XinShao mRNA sequence.
JR600242.1:483-502
CTCCCCGAATTCATAGTCATTTGGTAGTAT483TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
TSA: Pyrus x bretschneideri Unigene48870_XinShao mRNA sequence.
JR638941.1:817-836
CTCCCCAAATTCATAGTCATTTGGAAGTAT817TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Trifolium repens isolate ACLI19 chromosome 02_Occ.
CP125838.1:49679209-49679228
CCTATCAAAGAGATAACCCTTCGGAAAAAT49679209TGAGCAATAGGCAAAGCATCTTTTCAAATGAGAAGGAAGATGTTGATAAC
Trifolium repens isolate ACLI19 chromosome 02_Pall.
CP125839.1:45150727-45150746
CCTATCATAGAGATAACCCTTTGGAAAAAT45150727TGAGCAATAGGCAAAGCATCTTTTCAAATGAGAAGGAAGATGTTGATAAC
Quercus variabilis isolate HB chromosome 4a.
CP129448.1:11376673-11376692
CTTTTCAAATTCATAATCTTTCGGAAAAAT11376673TGAGCAATAGGCAAAGCATCGCTTCAAATGTGATGGGATGTAATGATAGC
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141912.1:745859-745878
CTCTTCAAATTCATAGTCATTTGGAAGTAT745859TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:708875-708894
CTCTTCGAATTCATAGTCATTTGGAAGTAT708875TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:726683-726702
CTCTTCAAATTCGTAGTCATTTGGAAGTAT726683TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141929.1:771862-771881
CTCTTCAAATTCATAGTCATTTGGAAGTAT771862TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAAGAAGATAAAAGTAGG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:721091-721110
CTCTTCGAATTCGTAGTCATTTGGAAGTAT721091TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:35063583-35063602
CTCACTAAATTCGTAGTCATTGGGAAGTAT35063583TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:35407850-35407869
CTCACTAAATTCGTAGTCATTGGGAAGTAT35407850TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:791251-791270
CTCTTCGAATTCGTAGTCATTTGGAAGTAT791251TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:37527982-37528001
CTCACTAAATTCGTAGTCATTGGGAAGTAT37527982TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143360.1:753265-753284
CTCTTCAAATTCATAGTCATTTGGAAGTAT753265TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:722775-722794
CTCTTCGAATTCGTAGTCATTTTGAAGTAT722775TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:35812265-35812284
CTCACTAAATTCGTAGTCATTGGGAAGTAT35812265TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143377.1:657862-657881
CTCTTCAAATTCATAGTCATTTGGAAGTAT657862TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:765809-765828
CTCTTTGAATTCATAGTCATTTGGAAGTAT765809TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus x robusta DNA fragment spanning resistance locus against Erwinia amylovora on linkage group 3, clone 16k15 contig2/4.
HE805491.1:16122-16141
CTCTTCAAATTCATAGTCATTTGGAAGTAT16122TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:37151734-37151753
CTCACTAAATTCGTAGTCATTGGGAAGTAT37151734TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Malus sylvestris genome assembly, chromosome: 3.
OU696505.1:733547-733566
CTCTTCAAATTCATAGTCATTTGGAAGTAT733547TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAAGAAGATAAAAGTAGG
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:832126-832145
CTCTTCGAATTCGTAGTCATTTGGAAGTAT832126TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus domestica genome assembly, chromosome: 2.
OU696678.1:37232507-37232526
CTCACTAAATTCGTAGTCATTGGGAAGTAT37232507TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Malus domestica genome assembly, chromosome: 3.
OU696679.1:811637-811656
CTCTTCAAATTCATAGTCATTTGGAAGTAT811637TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAAGAAGATAAAAGTAGG
Malus domestica genome assembly, chromosome: 11.
OU696687.1:821740-821759
CTCTTCGAATTCGTAGTCATTTGGAAGTAT821740TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus domestica genome assembly, chromosome: 2.
OU744543.1:37323540-37323559
CTCACTAAATTCGTAGTCATTGGGAAGTAT37323540TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Malus domestica genome assembly, chromosome: 3.
OU744544.1:727997-728016
CTCTTCAAATTCATAGTCATTTGGAAGTAT727997TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus domestica genome assembly, chromosome: 2.
OU744954.1:36904622-36904641
CTCACTAAATTCGTAGTCATTGGGAAGTAT36904622TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Malus domestica genome assembly, chromosome: 3.
OU744955.1:772172-772191
CTCTTCAAATTCATAGTCATTTGGAAGTAT772172TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAAGAAGATAAAAGTAGG
Malus domestica genome assembly, chromosome: 2.
OU744992.1:37292123-37292142
CTCACTAAATTCGTAGTCATTGGGAAGTAT37292123TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Malus domestica genome assembly, chromosome: 3.
OU744993.1:750320-750339
CTCTTCAAATTCATAGTCATTTGGAAGTAT750320TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus domestica genome assembly, chromosome: 11.
OU745001.1:798044-798063
CTCTTCGAATTCGTAGTCATTTGGAAGTAT798044TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38549939-38549958
CTCCCCGAATTCATAGTCATTTGGAAGTAT38549939TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38564342-38564361
ATCCCCGAATTCATAGTCATTTGGAAGTAT38564342TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38581593-38581612
CTCCCCGAATTCATAGTCATTTGGAAGTAT38581593TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38601855-38601874
CTCCCCGAATTCATAGTCATTTGGAAGTAT38601855TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38643389-38643408
CTCCCCGAATTCATAGTCATTTGGAAGTAT38643389TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Malus x robusta genome assembly, chromosome: 6.
OY720330.1:664647-664666
CTCTTCAAATTCATAGTCATTTGGAAGTAT664647TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38405161-38405180
CTCCCCGAATTCATAGTCATTTGGAAGTAT38405161TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38442141-38442160
CTCCCCGAATTCATAGTCATTTGGAAGTAT38442141TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38471481-38471500
CTCCCCAAATTCATAGTCATTTGGAAGTAT38471481TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25619353-25619372
ATCCCCGAATTCATAGTCATTTGGAAGTAT25619353TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:26497471-26497490
CTCACTAAATTCGTAGTCATTGGGAAGTAT26497471TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC
Pyrus communis genome assembly, chromosome: 14.
OY757081.1:1706430-1706449
CTTTTCAAATTCATAGTCTTTTGGAAAAAT1706430TGAGCAATAGGCAAAGCATCGTTTCAAGTAAGTTGGAAGATAGTGGTAGC
Potentilla sterilis genome assembly, chromosome: 1.
OY821754.1:74068211-74068230
TTTCCCAAATTCATAGTCATTGGGAAGTAT74068211TGAGCAATAGGCAAAGCATCTCTTCAATGTTGAAGGGAGATAATGATAAC
Potentilla sterilis genome assembly, chromosome: 11.
OY821764.1:45712521-45712540
TTTCCCAAATATATAGTCATTGGGAAGTAT45712521TGAGCAATAGGCAAAGCATCTCTTCAATGTTGAAGGGAGATAATGATAAC
Potentilla sterilis genome assembly, chromosome: 13.
OY821766.1:11487374-11487393
TTTCCCAAATTCATAGTCATTGGGTACTAT11487374TGAGCAATAGGCAAAGCATCTCTTCATAGTTGAAGGGAGATAATGATAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAGCAATAGGCAAAGCATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGCAATAGGCAAAGCATC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.255 | 0.246 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGCAATAGGCAAAGCATC&k=0&no_gap=0&offset=0&limit=50
0.303 | 0.048 | search_minus_done; http://172.18.8.135:50400/match?q=GATGCTTTGCCTATTGCTCA&k=0&no_gap=0&offset=0&limit=0
0.303 | 0.000 | cgi_end;

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