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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 05:55:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:77126750-77126769
GCTGCAGGAGCTGGAGCCTGAGAATAAATG77126750TGAGGCACATTCCCTGAGAGCCTATTCCCCAGAACCCATCTAAGGAAGCC
Pipistrellus nathusii genome assembly, chromosome: X.
OY882879.1:35437446-35437465
TCACACTGCACTGGCCAAAGCCACAGCACC35437446TGAGGCACATTCCCTGAGAGTCCTTCCTCCCAGGCAGTGGACTCTAAAAA
Barbus barbus genome assembly, chromosome: 46.
OW387162.1:2000112-2000131
GGTTTTCCACGAGCTTTGAGATGGCAAATA2000112TGAGGCACATTCCCTGAGAGTCCGTAAAAAATAAGTTGTTTATGTCACTC
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:1881360-1881379
AAGGCCCAACTTGGAAATCTTTGAAGAGAT1881360TGAGGCACATTCCCTGAGAGGTTATTGTTAGCCAAATCAAGCTGCTGCAA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:2162416-2162435
AAGGTCCAACTTGGAAATCTTTGAAGAGAT2162416TGAGGCACATTCCCTGAGAGGTTATTGTTAGCCAAATCAAGCTGCTGCAA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:1617580-1617599
AAGGCCCAACTTGGAAATCTCTGAAGAGAT1617580TGAGGCACATTCCCTGAGAGGTTATTGTTAGCCAAATCAAGCTGCTGTAA
Sciurus carolinensis genome assembly, chromosome: 2.
LR738591.1:126726382-126726401
GCTTCCTTAGATGGGTTCTGGGGGATTAGG126726382CTCTCAGGGAATGTGCCTCACATTTATTCTCAGGCTCCAGCTCCTGTAGC
Sylvilagus floridanus genome assembly, chromosome: 1.
OX463223.1:6151621-6151640
TTCCAAATCATAGCTAAGAGTGCCACTCCT6151621CTCTCAGGGAATGTGCCTCAGCAGACCTCTAACTCCACTGCTCCCCATGT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:42351950-42351969
TTGCAGCAGCTTGATTTGGCTAACAATAAC42351950CTCTCAGGGAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGCCTT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:31807740-31807759
TTGCAGCAGCTTGATTTGGCTAACAATAAC31807740CTCTCAGGGAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGCCTT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:30101628-30101647
TTGCAGCAGCTTGATTTGGCTAACAATAAC30101628CTCTCAGGGAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGCCTT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:31869122-31869141
TTGCAGCAGCTTGATTTGGCTAACAATAAC31869122CTCTCAGGGAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGCCTT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:31438613-31438632
TTGCAGCAGCTTGATTTGGCTAACAATAAC31438613CTCTCAGGGAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGCCTT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:29890916-29890935
TTGCAGCAGCTTGATTTGGCTAACAATAAC29890916CTCTCAGGGAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGCCTT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:28262706-28262725
TTGCAGCAGCTTGATTTGGCTAACAATAAC28262706CTCTCAGGGAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGCCTT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:32032766-32032785
TTGCAGCAGCTTGATTTGGCTAACAATAAC32032766CTCTCAGGGAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGCCTT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:31629164-31629183
TTGCAGCAGCTTGATTTGGCTAACAATAAC31629164CTCTCAGGGAATGTGCCTCAATCTCTTCAAAGATTTCCAAGTTGGGCCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAGGCACATTCCCTGAGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGGCACATTCCCTGAGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.098 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGGCACATTCCCTGAGAG&k=0&no_gap=0&offset=0&limit=50
0.124 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTCAGGGAATGTGCCTCA&k=0&no_gap=0&offset=0&limit=44
0.131 | 0.007 | cgi_end;

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