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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-04 04:46:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

000430AEPA001063HT (AEPA) Pinkie expanding leaf Malus domestica cDNA clone AEPA001063, mRNA sequence.
EB110691.1:318-337
AAGACACATATTAACTTAAAAATTAAAATT318TGATGGGAGAGAGCCCTTTTAAAATAAGCCCTACTCACTTTTGACCGCAG
ff_01H05_AH1 Md_fruit-fruit_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254806.1:42-61
AAGACACATATTAACTTAAAAATTAAAATT42TGATGGGAGAGAGCCCTTTTAAAATAAGCCCTACTCACTTTTGACCGCAG
TSA: Pyrus communis mRNA, contig: lc7731.
FX616316.1:197-216
ANCCTACACCTAAGACACATATAACTTNTT197TGATGGGAGAGAGCCCTTTTAAAATAAGCCCTTCTCACTTTTGACCGCAG
Sciurus vulgaris genome assembly, chromosome: 1.
LR738611.1:196510417-196510436
CAGGAAGCAGCTTGCTATCCGGGCTGCAGA196510417AAAAGGGCTCTCTCCCATCACACGAGCAGCGACTTCTCGGGTTATTGACA
Mdfr3005p19.y1 Mdfr Malus domestica cDNA clone Mdfr3005p19 5' similar to TR:Q9ZP31 Q9ZP31 EXPANSIN PRECURSOR, mRNA sequence.
CO066858.2:388-407
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT388AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
Mdfrt3030l19.y1 Mdfrt Malus domestica cDNA clone Mdfrt3030l19 5', mRNA sequence.
CO068642.1:45-64
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT45AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
Mdfrt3033f23.y1 Mdfrt Malus domestica cDNA clone Mdfrt3033f23 5', mRNA sequence.
CO418400.1:45-64
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT45AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
Mdfb8003I22.g1 Apple_EST_Mdfb Malus domestica cDNA similar to ref|NP_567151.1| 40S ribosomal protein S13 (RPS13B) [Arabidopsis thaliana] sp|P59224|R13B_ARATH 40S ribosomal protein S13-2 dbj|BAA88058.1
DT001505.1:516-535
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT516AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
010419AASA006666HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA006666, mRNA sequence.
EB124497.1:541-560
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT541AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
010616AVBC005943HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC005943, mRNA sequence.
EB127718.1:414-433
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT414AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
010616AVBC006088HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC006088, mRNA sequence.
EB127746.1:412-431
CTGCGGTCAAAAGTGAATAAGGCTTATTTT412AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGATAATATGTGTCTT
020805AVBC013171HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC013171, mRNA sequence.
EB132165.1:413-432
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT413AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
Mdstw6028C23.g1 Apple_EST_Mdstw Malus domestica cDNA 5' similar to dbj|BAC67191.1| expansin [Pyrus communis], mRNA sequence.
GO498044.1:545-564
TGCGGTCAAAAGTGAGTAGGGCTTATTTTT545AAAAGGGCTCTCTCCCATCAAATTTTAATTTTT
Mdfwf2085A09.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to dbj|BAC67191.1| expansin [Pyrus communis], mRNA sequence.
GO512262.1:371-390
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT371AAAAGGGCTCTCTCCCATCAAAGTTTAATTTTTAAGTTAATATGTGTCTT
Mdfrs3138J04.g1 Apple_EST_Mdfrs Malus domestica cDNA 5' similar to dbj|BAC67191.1| expansin [Pyrus communis], mRNA sequence.
GO520322.1:461-480
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT461AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
TSA: Pyrus communis mRNA, contig: lc103.
FX608690.1:428-447
CTGCGGTCAAAAGTGAGAAGGGCTTATTTT428AAAAGGGCTCTCTCCCATCAAATTTTAATTTTAAGTTATATGTGTCTTAG
TSA: Pyrus communis mRNA, contig: lc11371.
FX619955.1:321-340
CTGCGGTCAAAAGTGAGAAGGGCTTATTTT321AAAAGGGCTCTCTCCCATCAAATTTTAATTTTAAGTTATATGTGTCTTAG
TSA: Pyrus communis mRNA, contig: lc21989.
FX630469.1:429-448
CTGCGGTCAAAAGTGAGAAGGGCTTATTTT429AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTATGTGTCTTAGG
TSA: Pyrus communis mRNA, contig: lc25495.
FX633864.1:116-135
CTGCGGTCAAAAGTGAGAAGGGCTTATTTT116AAAAGGGCTCTCTCCCATCAAATTTTAANTTAAGTTATATGTGTCTTAGG
Pyrus communis PcExp4 mRNA for expansin, complete cds.
AB093031.1:1001-1020
CTGCGGTCAAAAGTGAGAAGGGCTTATTTT1001AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTATATGTGTCTTA
Malus x domestica MdEXPA4 mRNA for expansin, partial cds.
AB099925.1:861-880
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT861AAAAGGGCTCTCTCCCATCAAAGTTTAATTTTTAAGTTAATATGTGTCTT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:4427181-4427200
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4427181AAAAGGGCTCTCTCCCATCAATTTTTAATTTTTAAGTTAATATGTGTCTT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:4793825-4793844
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4793825AAAAGGGCTCTCTCCCATCAAAGTTTAATTTTTAAGTTAATATGTGTCTT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:4575459-4575478
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4575459AAAAGGGCTCTCTCCCATCAAAGTTTAATTTTTAAGTTAATATGTGTCTT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:5126286-5126305
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT5126286AAAAGGGCTCTCTCCCATCAAAGTTTAATTTTTAAGTTGATATGTGTCTT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:4832876-4832895
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4832876AAAAGGGCTCTCTCCCATCAAAGTTTAATTTTTAAGTTAATATGTGTCTT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:4425825-4425844
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4425825AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
Malus hupehensis expansin 2 mRNA, complete cds.
DQ993160.1:1008-1027
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT1008AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:4575486-4575505
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4575486AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
Malus domestica genome assembly, chromosome: 16.
OU696692.1:4891306-4891325
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4891306AAAAGGGCTCTCTCCCATCAAAGTTTAATTTTTAAGTTAATATGTGTCTT
Malus domestica genome assembly, chromosome: 16.
OU744557.1:4928489-4928508
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4928489AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTAATATGTGTCTT
Malus domestica genome assembly, chromosome: 16.
OU744968.1:4826814-4826833
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4826814AAAAGGGCTCTCTCCCATCAAAGTTTAATTTTTAAGTTAATATGTGTCTT
Malus domestica genome assembly, chromosome: 16.
OU745006.1:4904749-4904768
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4904749AAAAGGGCTCTCTCCCATCAAAGTTTAATTTTTAAGTTAATATGTGTCTT
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:4859669-4859688
CTGCGGTCAAAAGTGAGTAGGGCTTATTTT4859669AAAAGGGCTCTCTCCCATCAAATTTTAATTTTAAAGTTATATGTGTCTTA
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:4002484-4002503
CTGCGGTCAAAAGTGAGAAGGGCTTATTTT4002484AAAAGGGCTCTCTCCCATCAAATTTTAATTTTTAAGTTATATGTGTCTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGATGGGAGAGAGCCCTTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGATGGGAGAGAGCCCTTTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.259 | 0.251 | search_plus_done; http://172.18.8.135:50400/match?q=TGATGGGAGAGAGCCCTTTT&k=0&no_gap=0&offset=0&limit=50
1.005 | 0.746 | search_minus_done; http://172.18.8.135:50400/match?q=AAAAGGGCTCTCTCCCATCA&k=0&no_gap=0&offset=0&limit=47
1.025 | 0.020 | cgi_end;

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