GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 04:25:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:48949461-48949481
AAGAAACTAGGAGGTAGAATTGGTCTTCCC48949461TGGGAAACAAATGATGAGACCATGTGCATTGTAGACCTCCGTGCTGAGAAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086J10, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC172864.2:131043-131063
AGAATCTACTCAACCACACACTGATCACCT131043TGGGAAACAAATGATGAGACCAAGGATTTTATATAAGAAGAGAACTAATAA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:54871249-54871269
AGAATCTACTCAACCATACACTGATCACCT54871249TGGGAAACAAATGATGAGACCAAGGATTTTATATAAGAAGAGAACTAATAA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:54926474-54926494
AGAATCTACTTAACCATATACTGATCACCT54926474TGGGAAACAAATGATGAGACCAAGGATTATATAAGAACAGAGCTAACAAAA
Sequence 26 from patent US 9920330.
MI473327.1:693-713
TTATTAGTTCTCTTCTTATATAAAATCCTT693GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 225 from patent US 9920330.
MI473526.1:669-689
TTATTAGTTCTCTTCTTATATAAAATCCTT669GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGT
Sequence 842 from patent US 9920330.
MI473903.1:776-796
TTATTAGTTCTCTTCTTATATAAAATCCTT776GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 843 from patent US 9920330.
MI473904.1:700-720
TTATTAGTTCTCTTCTTATATAAAATCCTT700GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 844 from patent US 9920330.
MI473905.1:747-767
TTATTAGTTCTCTTCTTATATAAAATCGTT747GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTCT
Sequence 849 from patent US 9920330.
MI473910.1:653-673
TTATTAGTTCTCTTCTTATATAAAATCCTT653GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTC
Sequence 26 from patent US 10253327.
MM823503.1:693-713
TTATTAGTTCTCTTCTTATATAAAATCCTT693GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 225 from patent US 10253327.
MM823702.1:669-689
TTATTAGTTCTCTTCTTATATAAAATCCTT669GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGT
Sequence 842 from patent US 10253327.
MM824079.1:776-796
TTATTAGTTCTCTTCTTATATAAAATCCTT776GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 843 from patent US 10253327.
MM824080.1:700-720
TTATTAGTTCTCTTCTTATATAAAATCCTT700GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 844 from patent US 10253327.
MM824081.1:747-767
TTATTAGTTCTCTTCTTATATAAAATCGTT747GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTCT
Sequence 849 from patent US 10253327.
MM824086.1:653-673
TTATTAGTTCTCTTCTTATATAAAATCCTT653GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTC
Sequence 26 from patent US 10815492.
MV826085.1:693-713
TTATTAGTTCTCTTCTTATATAAAATCCTT693GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 225 from patent US 10815492.
MV826284.1:669-689
TTATTAGTTCTCTTCTTATATAAAATCCTT669GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGT
Sequence 842 from patent US 10815492.
MV826661.1:776-796
TTATTAGTTCTCTTCTTATATAAAATCCTT776GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 843 from patent US 10815492.
MV826662.1:700-720
TTATTAGTTCTCTTCTTATATAAAATCCTT700GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 844 from patent US 10815492.
MV826663.1:747-767
TTATTAGTTCTCTTCTTATATAAAATCGTT747GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTCT
Sequence 849 from patent US 10815492.
MV826668.1:653-673
TTATTAGTTCTCTTCTTATATAAAATCCTT653GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTC
Sequence 26 from patent US 11326179.
OO165773.1:693-713
TTATTAGTTCTCTTCTTATATAAAATCCTT693GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 225 from patent US 11326179.
OO165972.1:669-689
TTATTAGTTCTCTTCTTATATAAAATCCTT669GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGT
Sequence 842 from patent US 11326179.
OO166349.1:776-796
TTATTAGTTCTCTTCTTATATAAAATCCTT776GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 843 from patent US 11326179.
OO166350.1:700-720
TTATTAGTTCTCTTCTTATATAAAATCCTT700GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 844 from patent US 11326179.
OO166351.1:747-767
TTATTAGTTCTCTTCTTATATAAAATCGTT747GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTCT
Sequence 849 from patent US 11326179.
OO166356.1:653-673
TTATTAGTTCTCTTCTTATATAAAATCCTT653GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTC
Sequence 26 from patent US 11365421.
OO291179.1:693-713
TTATTAGTTCTCTTCTTATATAAAATCCTT693GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 225 from patent US 11365421.
OO291378.1:669-689
TTATTAGTTCTCTTCTTATATAAAATCCTT669GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGT
Sequence 842 from patent US 11365421.
OO291755.1:776-796
TTATTAGTTCTCTTCTTATATAAAATCCTT776GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 843 from patent US 11365421.
OO291756.1:700-720
TTATTAGTTCTCTTCTTATATAAAATCCTT700GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Sequence 844 from patent US 11365421.
OO291757.1:747-767
TTATTAGTTCTCTTCTTATATAAAATCGTT747GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTCT
Sequence 849 from patent US 11365421.
OO291762.1:653-673
TTATTAGTTCTCTTCTTATATAAAATCCTT653GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTC
BNDH2DCT_UP_018_D09_17JUN2004_073 Brassica napus seeds BNDH2DCT Brassica napus cDNA 5', mRNA sequence.
DW998385.1:631-651
TTATTAGTTCTCTTCTTATATAAAATCCTT631GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
9RDBNGA_UP_133_A10_16SEP2005_080 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES955096.1:242-262
TTATTAGTTCTCTTCTTATATAAAATCCTT242GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
BR064310 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-035B12 5', mRNA sequence.
EX079666.1:584-604
TTATTAGTTCTCTTCTTATATAAAATCCTT584GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
KBrB038L06F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB038L06, genomic survey sequence.
DX039292.1:437-457
TTATTAGTTCTCTTCTTATATAAAATCCTT437GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
KBrB074B19R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB074B19, genomic survey sequence.
DX066118.1:289-309
TTATTAATTCTCTTCTTATATAAAATCCTT289GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
KBrB086J10R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB086J10, genomic survey sequence.
DX075571.1:438-458
TTATTAGTCCTCTCCTTATATAAAATCCTT438GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
KBrB099N18F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB099N18, genomic survey sequence.
ED515219.1:455-475
TTATTAGTTCTCTTCTTATATAAAATCCTT455GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
KBrB100N18F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB100N18, genomic survey sequence.
ED515958.1:455-475
TTATTAGTTCTCTTCTTATATAAAATCCTT455GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
KBrB130P03F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB130P03, genomic survey sequence.
ED537646.1:455-475
TTATTAGTTCTCTTCTTATATAAAATCCTT455GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:5234077-5234097
TTTTTAGTTCTCTTCTTATATAAAATCCTT5234077GGTCTCATCATTTGTTTCCCAAAGTGATCACTGTATGGTTGAGTAGATTCT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:4138910-4138930
TTATTAGTTCTCTTCTTATATAAAATCCTT4138910GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTGTGGTTGAGTAGATTCT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:4405519-4405539
TTTTGTTAGCTCTGTTCTTATATAATCCTT4405519GGTCTCATCATTTGTTTCCCAAGGTGATCAGTATATGGTTAAGTAGATTCT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:4460677-4460697
TTATTAGTTCTCTTCTTATATAAAATCCTT4460677GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTATGGTTGAGTAGATTCT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:4354396-4354416
TTTATTAGTTCTCTTCTTATAAAAATCCTT4354396GGTCTCATCATTTGTTTCCCAAGGTGATCAGTGTATGGTTGAGTAGATTCT
Myrica gale genome assembly, chromosome: 3.
OZ005600.1:4942655-4942675
CAAATCTGCTTCTTTTTTTGCTCTCTTTTC4942655GGTCTCATCATTTGTTTCCCATCAACAAAATTCATCTCCCAAGCCAATCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGGAAACAAATGATGAGACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGGAAACAAATGATGAGACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=TGGGAAACAAATGATGAGACC&k=0&no_gap=0&offset=0&limit=50
2.492 | 2.396 | search_minus_done; http://172.18.8.135:50400/match?q=GGTCTCATCATTTGTTTCCCA&k=0&no_gap=0&offset=0&limit=46
2.521 | 0.029 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).