GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-09 22:15:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acomys kempi genome assembly, chromosome: 9.
OU015363.1:25637254-25637273
ATAGCAACCACCTTTAGCTGTGCAGCTGCA25637254TGTCCACCCTCTGACAAAGAGCAAGCAGGACACAGAGGAGAAAGGACAGA
Acomys dimidiatus genome assembly, chromosome: 9.
OU015382.1:25761703-25761722
ATAGCAACCACCTTTAGCTGTGCAGCCGCA25761703TGTCCACCCTCTGACAAAGAGCAAGCAGGACTCAGAGGAGAAAGGACAGA
Acomys percivali genome assembly, chromosome: 9.
OU015750.1:27386621-27386640
ATAGCAACCACCTTTAGCTGTGTAGCTGCA27386621TGTCCACCCTCTGACAAAGAGCAAGCAGGACACAGAGGAGAAAGGACAGA
00165 leafy spurge subtractive cDNA libraries Euphorbia esula cDNA clone RDP3C13 5' similar to cold-induced protein, mRNA sequence.
DT639338.1:333-352
GTCGCGCCCTGTGCTTTCTGCTTCAGCTGC333TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
65JKBNM0_T3_008_A02_16MAR2005_016 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587311.1:318-337
GTGGCACCCTGTGCTTTCTGCTTCAGCTGC318TGTCCACCCTCTGACAAAGATTCCTTGGCGGATTGGGCAGCATTGGAGGC
69JKME5D_T3_020_B01_28MAR2005_013 69JKME5D Brassica napus cDNA 5', mRNA sequence.
ES267773.1:324-343
GTGGCACCCTGTGCTTTCTGCTTCAGCTGC324TGTCCACCCTCTGACAAAGATTCCTTGGCGGATTGGGCAGCATTGGAGGC
0141186 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV151264.1:339-358
GTGGCACCCTGTGCTTTCTGCCTCAGCTGC339TGTCCACCCTCTGACAAAGATTCCTTGGCGGATTGGGCAGCATTGGAGGT
BR024623 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-072C06 5', mRNA sequence.
EX039979.1:246-265
GTGGCACCCTGTGCTTTCTGCTTCAGCTGC246TGTCCACCCTCTGACAAAGATTCCTTGGCGGATTGGGCAGCATTGGAGGC
RR2CN20JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX760955.1:304-323
GTCGCACCCTGTGCTTTCTGCTTCAGCTGC304TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RR3BL58JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX766280.1:343-362
GTCGCACCCTGTGCTTTCTGCTTCAACTGC343TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RS2CQ96JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900953.1:216-235
GTCGCACCCTGTGCTTTCTGCTTCAGCTGC216TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RR1D155JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY893274.1:344-363
GTCGCACCCTGTGCTTTCTGCTTCAACTGC344TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RR1DS64JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY895057.1:346-365
GTCGCACCCTGTGCTTTCTGCTTCAACTGC346TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RS1DB80JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EY926708.1:261-280
GTCGCACCCTGTGCTTTCTGCTTCAACTGC261TGTCCACCCTCTGACAAAGACTCCTTGGCAGATTGAGCAGCATTAGAGGC
RS2E791JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY936281.1:334-353
GTCGCACCCTGTGCTTTCTGCTTCAGCTGC334TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RR2EG63JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD536636.1:347-366
GTCGCACCCTGTGCTTTCTGCTTCAGCTGC347TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RR4F148JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD553882.1:337-356
GTCGCACCCTGTGCTTTCTGCTTCAGCTGC337TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RS2EV30JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573115.1:336-355
GTCGCACCCTGTGCTTTCTGCTTCAGCTGC336TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RS1H614JQB RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD937410.1:348-367
GTCGCACCCTGTGCTTTCTGCTTCAACTGC348TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RS3H675JQB RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD953872.1:348-367
GTCGCACCCTGTGCTTTCTGCTTCAGCTGC348TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAAAGGC
RR2GQ75JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD968395.1:352-371
GTCGCACCCTGTGCTTTCTGCTTCAGCGGC352TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RR2GW03JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD968745.1:337-356
GTCGCACCCTGTGCTTTCTGCTTCAGCTGC337TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
RR4GS81JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD984737.1:276-295
GTCGCACCCTGTGCTTTCTGCTTCAGCTGC276TGTCCACCCTCTGACAAAGATTCCTTGGCAGATTGAGCAGCATTAGAGGC
Rattus norvegicus DNA, BAC clone: RNB2-360I20, 5' end.
FT164393.1:36-55
TAAATAGCAGCCAGCTTTGGCTGTCCAGCA36TGTCCACCCTCTGACAAAGAACAAAGAGGACACAGATGCGAGAGGGCAGA
Rattus norvegicus DNA, BAC clone: RNB2-400J06, 3' end.
FT190954.1:38-57
TAAATAGCAGCCAGCTTTGGCTGTCCAGCA38TGTCCACCCTCTGACAAAGAACAAAGAGGACACAGATGCGAGAGGGCAGA
Pandemis cinnamomeana genome assembly, chromosome: 5.
OW028707.1:5708680-5708699
GACTCAAATATGCGATGGGCTTCTCAGCGT5708680TGTCCACCCTCTGACAAAGAACCGCGCCTACTCCGCTATTTGATGCGTCA
Gibbula magus genome assembly, chromosome: 1.
OW388289.1:88772140-88772159
AACTTAACTGTCGATTAGATACAATAGATT88772140TGTCCACCCTCTGACAAAGACGTCATGAATATTTTAACTTTGAACCATAT
Acomys russatus genome assembly, chromosome: 24.
LR877235.1:32853085-32853104
CCTGTCCTTTCTCCTCTGTGTCTTGCTTGC32853085TCTTTGTCAGAGGGTGGACATGCAGCTGCACAGCTAAAGGTGGTTGCTAT
RFO2.001N05F000720 RFO2 Brassica napus cDNA clone RFO2001N05, mRNA sequence.
CD838071.1:176-195
GCCTCCAATGCTGCCCAATCCGCCAAGGAA176TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
RFO2.110L16F010522 RFO2 Brassica napus cDNA clone RFO2110L16, mRNA sequence.
CD838313.1:193-212
GCCTCCAATGCTGCCCAATCCGCCAAGGAA193TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
RFO2.112J22F010523 RFO2 Brassica napus cDNA clone RFO2112J22, mRNA sequence.
CD838805.1:174-193
ACCTCCAATGCTGCCCAATCCGCCAAGGAA174TCTTTGTCAGAGGGTGGACAGCAGCTGAGGCAGAAAGCACAGGGTGCCAC
RFO2.124P15F010620 RFO2 Brassica napus cDNA clone RFO2124P15, mRNA sequence.
CD841862.1:169-188
GCCTCCAATGCTGCCCAATCCGCCAAGGAA169TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
RFO2.127M05F010919 RFO2 Brassica napus cDNA clone RFO2127M05, mRNA sequence.
CD842488.1:179-198
ACCTCCAATGCTGCCCAATCCGCCAAGGAA179TCTTTGTCAGAGGGTGGACAGCAGCTGAGGCAGAAAGCACAGGGTGCCAC
RFO2.129E07F010921 RFO2 Brassica napus cDNA clone RFO2129E07, mRNA sequence.
CD842844.1:168-187
GCCTCCAATGCTGCCCAATCCGCCAAGGAA168TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
RFO2.130H12F011011 RFO2 Brassica napus cDNA clone RFO2130H12, mRNA sequence.
CD843094.1:173-192
GCCTCCAATGCTGCCCAATCCGCCAAGGAA173TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
RFO2.132M16F011016 RFO2 Brassica napus cDNA clone RFO2132M16, mRNA sequence.
CD843566.1:174-193
ACCTCCAATGCTGCCCAATCCGCCAAGGAA174TCTTTGTCAGAGGGTGGACAGCAGCTGAGGCAGAAAGCACAGGGTGCCAC
RFO2.134O10F011010 RFO2 Brassica napus cDNA clone RFO2134O10, mRNA sequence.
CD843978.1:177-196
ACCTCCAATGCTGCCCAATCCGCCAAGGAA177TCTTTGTCAGAGGGTGGACAGCAGCTGAGGCAGAAAGCACAGGGTGCCAC
RFO2.139C10F011221 RFO2 Brassica napus cDNA clone RFO2139C10, mRNA sequence.
CD844545.1:198-217
ACCTCCAATGCTGCCCAATCCGCCAAGGAA198TCTTTGTCAGAGGGTGGACAGCAGCTGAGGCAGAAAGCACAGGGTGCCAC
RFO2.141A05F011226 RFO2 Brassica napus cDNA clone RFO2141A05, mRNA sequence.
CD844951.1:198-217
ACCTCCAATGCTGCCCAATCCGCCAAGGAA198TCTTTGTCAGAGGGTGGACAGCAGCTGAGGCAGAAAGCACAGGGTGCCAC
RFO2.141K13F011226 RFO2 Brassica napus cDNA clone RFO2141K13, mRNA sequence.
CD845105.1:185-204
ACCTCCAATGCTGCCCAATCCGCCAAGGAA185TCTTTGTCAGAGGGTGGACAGCAGCTGAGGCAGAAAGCACAGGGTGCCAC
12JKBNM1_UP_001_E03_19NOV2003_023 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727724.1:176-195
GCCTCCAATGCTGCCCAATCCGCCAAGGAA176TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
12JKBNM1_UP_003_C05_19NOV2003_043 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727889.1:168-187
ACCTCCAATGCTGCCCAATCCGCCAAGGAA168TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
12JKBNM1_UP_003_D08_19NOV2003_058 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727904.1:177-196
ACCTCCAATGCTGCCCAATCCGCCAAGGAA177TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
78-E022824-021-016-K19-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022K1916Q, mRNA sequence.
CX189236.1:152-171
ACCTCCAATGCTGCCCAATCCGCCAAGGAA152TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
65-E019365-021-009-B17-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022B179Q, mRNA sequence.
CX190468.1:121-140
GCCTCCAATGCTGCCCAATCCGCCAAGGAA121TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
49-E010651-021-004-A14-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022A144Q, mRNA sequence.
CX191812.1:165-184
ACCTCCAATGCTGCCCAATCCGCCAAGGAA165TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
22-E023031-021-019-K06-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022K0619Q, mRNA sequence.
CX194285.1:149-168
GCCTCCAATGCTGCCCAATCCGCCAAGGAA149TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
17-E011128-021-005-A06-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022A065Q, mRNA sequence.
CX194786.1:145-164
ACCTCCAATGCTGCCCAATCCGCCAAGGAA145TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
Brassica oleracea var. viridis mRNA, clone: KALE-023H10, 5' end sequence.
DK464518.1:177-196
ACCTCCAATGCTGCCCAATCCGCCAAGGAA177TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
Brassica oleracea var. viridis mRNA, clone: KALE-023H10, 3' end sequence.
DK524132.1:177-196
ACCTCCAATGCTGCCCAATCCGCCAAGGAA177TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
13JKBNM2_UP_025_A02_15DEC2003_016 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
ES265319.1:169-188
GCCTCCAATGCTGCCCAATCCGCCAAGGAA169TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
Brassica rapa clone S11 ABA-inducible protein-like protein mRNA, complete cds.
EU186321.1:118-137
GCCTCCAATGCTGCCCAATCCGCCAAGGAA118TCTTTGTCAGAGGGTGGACAGCAGCTGAAGCAGAAAGCACAGGGTGCCAC
Rattus norvegicus clone CH230-90M18, WORKING DRAFT SEQUENCE.
AC131473.4:135154-135173
TCTGCCCTCTCGCATCTGTGTCCTCTTTGT135154TCTTTGTCAGAGGGTGGACATGCTGGACAGCCAAAGCTGGCTGCTATTTA
Pandemis cinnamomeana genome assembly, chromosome: 6.
OW028708.1:13956232-13956251
TGACGCATCAAATAGCGGAGTAGGCGCGGT13956232TCTTTGTCAGAGGGTGGACAACGCTGAGAAGCCCATCGCATATTTGAGTC
Pandemis cinnamomeana genome assembly, chromosome: 18.
OW028720.1:7182043-7182062
TGACGCATCAAATAGCGGAGTAGGCGCGGT7182043TCTTTGTCAGAGGGTGGACAACGCTGAGAAGCCCATCGCATATTTGAGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTCCACCCTCTGACAAAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTCCACCCTCTGACAAAGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.304 | 1.296 | search_plus_done; http://172.18.8.135:50400/match?q=TGTCCACCCTCTGACAAAGA&k=0&no_gap=0&offset=0&limit=50
1.967 | 0.663 | search_minus_done; http://172.18.8.135:50400/match?q=TCTTTGTCAGAGGGTGGACA&k=0&no_gap=0&offset=0&limit=23
1.985 | 0.018 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).