GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-16 12:28:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-025I01, 5' end sequence.
DK465298.1:176-201
CATCGAGAGCGCCATTAAGAAGAATGAAAG176TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
Brassica oleracea var. viridis mRNA, clone: KALE-070A12, 5' end sequence.
DK482320.1:228-253
CATCGAGAGCGCCATTAAGAAGAATGAAAG228TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
Brassica oleracea var. viridis mRNA, clone: KALE-070M11, 5' end sequence.
DK482607.1:228-253
CATCGAGAGCGCCATTAAGAAGAATGAAAG228TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
Brassica oleracea var. viridis mRNA, clone: KALE-152P07, 5' end sequence.
DK514032.1:483-508
CATCGAGAGCGCCATTAAGAAGAATGAAAG483TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
BNSCS2CT_UP_035_G08_07JAN2005_052 Brassica napus seed coat BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EE464970.1:252-277
CATCGAAAGCGCCATTAAGAAGAATGAAAG252TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGCGCTGATGTGACATCTCCAG
BNARO2GH_T3_010_D02_15DEC2006_010 Brassica napus BNARO2GH Brassica napus cDNA 5', mRNA sequence.
ES911450.1:88-113
CATCGAGAGCGCCATTAAGAAGAATGAAAG88TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
0131282 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV125970.1:281-306
CATCGAGAGCGCCATTAAGAAGAATGAAAG281TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
0101235 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV200082.1:311-336
CATCGAAAGCGCCATTAAGAAGAATGAAAG311TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGCGCTGATGTGACATCTCCAG
BR088337 seed and seedling cDNA library KFSD Brassica rapa subsp. pekinensis cDNA clone KFSD-004H11 5', mRNA sequence.
EX102047.1:245-270
CATCGAAAGCGCCATTAAGAAGAATGAAAG245TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGCGCTGATGTGACATCTCCAG
RS3D089TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY946179.1:204-229
CATCGAAAGCGCCATTAAAAAGAACGAAAG204TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
RR3EI93TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD548394.1:477-502
CATCGAAAGCGCTATTAAAAAGAATGAAAG477TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
RS3G845TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD955391.1:251-276
CATCGAAAGCGCCATTAAAAAGAACGAAAG251TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
Raphanus sativus mRNA, clone: RSCR05B19, 5' end sequence.
FY441201.1:181-206
CATCGAAAGCGCTATTAAAAAGAATGAAAG181TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
BOICS16TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOICS16, genomic survey sequence.
CC951601.1:37-62
GGTGATGTTTGTGCTTTTGTAGAATGAAAG37TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
Brassica rapa subsp. pekinensis clone KBrH022J23, complete sequence.
FP236661.1:12103-12128
TTCTTTGGTGATGCTGTTGTAGAATGAAAG12103TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGCGCTGATGTGACATCTCCAG
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:7266370-7266395
TGGTGATGTTGTGCTCTTGTAGAATGAAAG7266370TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
Brassica napus genome assembly, chromosome: C06.
HG994370.1:6646592-6646617
TGGTGATGTTGTGCTCTTGTAGAATGAAAG6646592TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:3593289-3593314
GGTGATGTTTGTGCTCTTGTAGAATGAAAG3593289TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:28561010-28561035
AGTTTCTTTGGTGATGTTGTAGAATGAAAG28561010TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCTGATGTGACATCTCCAG
Barbarea vulgaris genome assembly, chromosome: 7.
OY763893.1:6738750-6738775
TTTCTTTCTTTCTTTCTTGTAGAATGAAAG6738750TGTGAATGGGCATTACAAGAACGTCAAGTTTATGTGTGCGGATGTTACATCACCTG
Raphanus sativus mRNA, clone: RSCL13P20, 5' end sequence.
FY437508.1:130-155
CTGGAGATGTCACATCAGCACACATAAACT130TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTTTTAATAGCGCTTTCGATG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13169.
FX658422.1:1256-1281
CTGGAGATGTCACATCAGCACACATAAACT1256TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTTTTAATAGCGCTTTCGATG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15238.
FX697052.1:1209-1234
CTGGAGATGTCACATCAGCGCACATAAACT1209TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTCTTAATGGCGCTTTCGATG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_33199.
FX732413.1:1011-1036
CAGGAGATGTCACATCAGCACACATAAACT1011TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTCTTAATGGCGCTCTCGATG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_18921.
FX734315.1:1011-1036
CTGGAGATGTCACATCAGCACACATAAACT1011TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTTTTTAATAGCGCTTTCGATG
TSA: Raphanus sativus RS11164 mRNA sequence.
JT795711.1:1171-1196
CTGGAGATGTCACATCAGCACACATAAACT1171TGACGTTCTTGTAATGCCCATTCACACTTTCGTTCTTTTTAATGGCGCTTTCGATG
KBrB062H22R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB062H22, genomic survey sequence.
DX057296.1:48-73
CTGGAGATGTCACATCAGCGCACATAAACT48TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACAGCATCACCAAAGAA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:3802610-3802635
CAGGAGATGTCACATCAGCACACATAAACT3802610TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACAACATCACCAAAGAA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:2785051-2785076
CTGGAGATGTCACATCAGCGCACATAAACT2785051TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACAGCATCACCAAAGAA
Brassica rapa genome, scaffold: A06.
LR031569.1:2730066-2730091
CTGGAGATGTCACATCAGCGCACATAAACT2730066TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACAGCATCACCAAAGAA
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:4601143-4601168
CTGGAGATGTCACATCAGCACACATAAACT4601143TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACATCACCAAAGAAACT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:2832863-2832888
CTGGAGATGTCACATCAGCGCACATAAACT2832863TGACGTTCTTGTAATGCCCATTCACACTTTCATTCTACAACAGCATCACCAAAGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGTGAATGGGCATTACAAGAACGTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTGAATGGGCATTACAAGAACGTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.767 | 0.757 | search_plus_done; http://172.18.8.135:50400/match?q=TGTGAATGGGCATTACAAGAACGTCA&k=0&no_gap=0&offset=0&limit=50
0.935 | 0.169 | search_minus_done; http://172.18.8.135:50400/match?q=TGACGTTCTTGTAATGCCCATTCACA&k=0&no_gap=0&offset=0&limit=30
0.944 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).