GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 09:51:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Capsicum annuum MGMT_Contig12349, mRNA sequence.
JW062593.1:522-541
CATTCGGAATAAATACTCTTTTAGCCAAGA522TTATGTGCACGGGTCTCAAAGTGACCTATATTTTTTATAAATAGTATACT
KS16037A05 KS16 Capsicum annuum cDNA, mRNA sequence.
GD072875.1:140-159
AGTATACTATTTATAAAAAATATAGGTCAC140TTTGAGACCCGTGCACATAATCTTGGCTAAAAGAGTATTTATTCCGAATG
KS16045B07 KS16 Capsicum annuum cDNA, mRNA sequence.
GD073644.1:677-696
AGTATACTATTTATAAAAAATATAGGTCAC677TTTGAGACCCGTGCACATAAT
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:255980689-255980708
AGTATACTATTTATAAAAAATATAGGTCAC255980689TTTGAGACCCGTGCACATAATCTTGGCTAAAAGAGTATTTATTCCGAATG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:255928974-255928993
AGTATACTATTTATAAAAAATATAGGTCAC255928974TTTGAGACCCGTGCACATAATCTTGGCTAAAAGAGTATTTATTCCGAATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTATGTGCACGGGTCTCAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTATGTGCACGGGTCTCAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=TTATGTGCACGGGTCTCAAA&k=0&no_gap=0&offset=0&limit=50
0.275 | 0.166 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGAGACCCGTGCACATAA&k=0&no_gap=0&offset=0&limit=49
0.278 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).