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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:52:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR1E586TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY900426.1:68-89
AGGCTCTTGCCTTGCCTAGGGCTTGTAATG68TTCAAACTCCTCCTGTCAGTCGCTGTAACAACGGTGGTGGTTCTACTGCTGA
RS2DB35TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY937711.1:383-404
AGGCTCTTGCCTTGCCTAGGGCTTGTAATG383TTCAAACTCCTCCTGTCAGTCGCTGTAACAGCGGTGGTGGTTCTACTGCTGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_30908.
FX671564.1:370-391
AGGCTCTTGCCTTGCCTAGGGCTTGTAATG370TTCAAACTCCTCCTGTCAGTCGCTGTAACAACGGTGGTGGTTCTACTGCTGA
oek41c10.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH995074.1:434-455
AGGCTCTTGCTTTGCCTAGGGCTTGTAATG434TTCAAACTCCTCCTGTCAGTCGCTGTAACAACGGTAAGAGAATTTCAAGAAA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:37836506-37836527
AGGCTCTTGCTTTGCCTAGGGCTTGTAATG37836506TTCAAACTCCTCCTGTCAGTCGCTGTAACAACGGTAAGAGAATTTCAAGAAA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:37837879-37837900
AGGCTCTTGCTTTGCCTAGGGCTTGTAATG37837879TTCAAACTCCTCCTGTCAGTCGCTGTAACAACGGTAAGAGAATTTCAAGAAA
Brassica rapa genome, scaffold: A01.
LR031571.1:28226404-28226425
AGGCTCTTGCCTTGCCTCGGGCTTGTAATG28226404TTCAAACTCCTCCTGTCAGTCGCTGTAGCAACGGTAAGAAAATTTCAAGAAA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:37487881-37487902
AGGCTCTTGCTTTGCCTAGGGCTTGTAATG37487881TTCAAACTCCTCCTGTCAGTCGCTGTAACAACGGTAAGAGAATTTCAAGAAA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:37489256-37489277
AGGCTCTTGCTTTGCCTAGGGCTTGTAATG37489256TTCAAACTCCTCCTGTCAGTCGCTGTAACAACGGTAAGAGAATTTCAAGAAA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:28752735-28752756
AGGCTCTTGCCTTGCCTCGGGCTTGTAATG28752735TTCAAACTCCTCCTGTCAGTCGCTGTAGCAACGGTAAGAAAATTTCAAGAAA
Arabidopsis thaliana cDNA clone:RAFL08-09-M05, 3'-end.
AV793685.1:398-419
TACAACCACCACCACACCACCGGTATTACG398CGACTGACAGGAGGAGTTTGAACATTACCAGGCCCTAGGCCGACC
44JK5DM_UP_048_B06_4JULY2006_046 Brassica napus 44JK5DM Brassica napus cDNA 5', mRNA sequence.
ES986111.1:132-153
ATTGCGATGTAGGAAGCCACGGAAAGGAAG132CGACTGACAGGAGGAGTTTGAACATTACAAGCCCTAGGCAAAGCAAGAGCCT
RR1E586JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY895973.1:415-436
TCAGCAGTAGAACCACCACCGTTGTTACAG415CGACTGACAGGAGGAGTTTGAACATTACAAGCCCTAGGCAAGGCAAGAGCCT
RS2DB35JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY933974.1:405-426
TCAGCAGTAGAACCACCACCGCTGTTACAG405CGACTGACAGGAGGAGTTTGAACATTACAAGCCCTAGGCAAGGCAAGAGCCT
BOGPS13TF BOGP Brassica oleracea genomic clone BOGPS13, genomic survey sequence.
BH521823.1:85-106
TTTCTTGAAATTCTCTTACCGTTGTTACAG85CGACTGACAGGAGGAGTTTGAACATTACAAGCCCTAGGCAAAGCAAGAGCCT
oei23h10.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH998979.1:607-628
TTTCTTGAAATTCTCTTACCGTTGTTACAG607CGACTGACAGGAGGAGTTTGAACATTACAAGCCCTANGCAAAGCAAGAGCCT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:12619378-12619399
TTTCTTGAAATTTTCTTACCGTTGCTACAG12619378CGACTGACAGGAGGAGTTTGAACATTACAAGCCCGAGGCAAGGCAAGAGCCT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:6796498-6796519
TTTCTTGAATTTTTCTTACCGTTGTTACAG6796498CGACTGACAGGAGGAGTTTGAACATTACAAGCCCTAGGCAAGGCAAGAGCCT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:6796498-6796519
TTTCTTGAATTTTTCTTACCGTTGTTACAG6796498CGACTGACAGGAGGAGTTTGAACATTACAAGCCCTAGGCAAGGCAAGAGCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCAAACTCCTCCTGTCAGTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCAAACTCCTCCTGTCAGTCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.274 | 0.266 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAAACTCCTCCTGTCAGTCG&k=0&no_gap=0&offset=0&limit=50
0.528 | 0.254 | search_minus_done; http://172.18.8.135:50400/match?q=CGACTGACAGGAGGAGTTTGAA&k=0&no_gap=0&offset=0&limit=40
0.534 | 0.006 | cgi_end;

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