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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:46:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus mRNA, clone: RSCR17P02, 5' end sequence.
FY445238.1:202-221
CTCGATGATACACCCTCGACTCCAGGCAAG202TTCAAGATCGACAAATCCCCCTACTTCCTCCACCGCACGCGCTGGCAATC
Raphanus sativus mRNA, clone: RSCS05M08, 5' end sequence.
FY447831.1:198-217
CTCGATGATACACCCTCGACTCCAGGCAAG198TTCAAGATCGACAAATCCCCCTACTTCCTCCACCGCACGCGCTGGCAATC
Raphanus sativus mRNA, clone: RSCS07M20, 5' end sequence.
FY448533.1:193-212
CTCGATGATACACCCTCGACTCCAGGCAAG193TTCAAGATCGACAAATCCCCCTACTTCCTCCACCGCACGCGCTGGCAATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_60473.
FX798120.1:263-282
CTCGATGATACACCCTCGACTCCAGGCAAG263TTCAAGATCGACAAATCCCCCTACTTCCTCCACCGC
Antiaris toxicaria isolate JCLG002 chromosome 9.
CP141161.1:12756679-12756698
CTTGACAACATTCCCTCCACACCGGGCAAG12756679TTCAAGATCGACAAATCCCCTTATCACCACCACCACCACGGCCGTTTCCG
Antiaris toxicaria isolate JCLG002 chromosome 9.
CP141174.1:12190403-12190422
CTTGACAACATTCCCTCCACACCGGGCAAG12190403TTCAAGATCGACAAATCCCCTTATCACCACCACCACCACGGCCGTTTCCG
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:33519102-33519121
CTCGATGATACACCCTCGACTCCAGGCAAG33519102TTCAAGATCGACAAATCCCCCTACTTCCTCCACCGCACGCGCTGGCAATC
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:33519102-33519121
CTCGATGATACACCCTCGACTCCAGGCAAG33519102TTCAAGATCGACAAATCCCCCTACTTCCTCCACCGCACGCGCTGGCAATC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_18045.
FX679323.1:155-174
GATTGCCAGCGCGTGCGGTGGAGGAAGTAG155GGGGATTTGTCGATCTTGAACTTGCCTGGAGTCGAGGGTGTATCATCGAG
TSA: Raphanus sativus RS15020 mRNA sequence.
JT799567.1:56-75
GATTGCCAGCGCGTGCGGTGGAGGAAGTAG56GGGGATTTGTCGATCTTGAACTTGCCTGGAGTCGAGGGTGTATCATCGAG
Chenopodium album genome assembly, chromosome: 10.
OX419217.1:53326630-53326649
CCTCAAAAATTATTTATTCTTTTTTTTTGA53326630GGGGATTTGTCGATCTTGAATTGTTGCCTTATTGGCTACTAATCTCCCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCAAGATCGACAAATCCCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCAAGATCGACAAATCCCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.333 | 0.325 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAAGATCGACAAATCCCC&k=0&no_gap=0&offset=0&limit=50
0.369 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GGGGATTTGTCGATCTTGAA&k=0&no_gap=0&offset=0&limit=42
0.371 | 0.002 | cgi_end;

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