GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-27 21:15:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciaenops ocellatus chromosome 3.
CP136868.1:2266440-2266459
CTCCCCTGGGATGCATAAGAAATTCTTCTG2266440TTGGTGGAAGTTGTGGACCTCATGAACAGGGGCCTCTGCCAGAAGTTCCC
Sciaenops ocellatus chromosome 3.
CP136868.1:2287629-2287648
CTCCCCTGGGATGCATAAGAAATTCTTCTG2287629TTGGTGGAAGTTGTGGACCTCATGAACAGGGGCCTCCGCCAGAAGTTCCC
Phalacrocorax carbo genome assembly, chromosome: 23.
OY997625.1:6592699-6592718
AGATCCTCAGCTCTCAGAATGCCCTTAACT6592699TTGGTGGAAGTTGTGGACCTGGACTGTATGTTCCTGAACCTCTGCCTCTC
UCRVU04_CCNI11607_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI11607.g1, mRNA sequence.
FG810466.1:238-257
TAAATTAGATCTTGCCACGGGGACCTAGCT238TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU04_CCNI11904_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI11904.g1, mRNA sequence.
FG811055.1:207-226
TAAATTAGATCTTGCCACGGGGACCTAGCT207TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU04_CCNI12207_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI12207.g1, mRNA sequence.
FG811630.1:207-226
TAAATTAGATCTTGCCACGGGGACCTAGCT207TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU04_CCNI5044_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI5044.g1, mRNA sequence.
FG818974.1:207-226
TAAATTAGATCTTGCCACGGGGACCTAGCT207TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU04_CCNI5449_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI5449.g1, mRNA sequence.
FG819679.1:318-337
TAAATTAGATCTTGCCACGGGGACCTAGCT318TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU04_CCNI7702_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI7702.g1, mRNA sequence.
FG823393.1:207-226
TAAATTAAATCTTGCCACGGGGACCTAGCT207TTGGTGGAAGTTGTGGACCTTTCTTGATTGGT
UCRVU04_CCNI8280_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI8280.g1, mRNA sequence.
FG824495.1:229-248
TAAATTAGATCTTGCCACGGGGACCTAGCT229TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU04_CCNI9349_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI9349.g1, mRNA sequence.
FG826537.1:177-196
TAAATTAGATCTTGCCACGGGGACCTAGCT177TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU04_CCNI16088_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI16088.b1, mRNA sequence.
FG833700.1:209-228
TAAATTAGATCTTGCCACGGGGACCTAGCT209TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU05_CCNN1530_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN1530.g1, mRNA sequence.
FG836233.1:301-320
TAAATTAGATCTTGCCACGGGGACCTAGCT301TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU05_CCNN4134_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN4134.g1, mRNA sequence.
FG840690.1:207-226
TAAATTAGATCTTGCCACGGGGACCTAGCT207TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU05_CCNN23504_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN23504.g1, mRNA sequence.
FG860637.1:209-228
TAAATTAGATCTTGCCACGGGGACCTAGCT209TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU07_CCNP2022_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP2022.g1, mRNA sequence.
FG863561.1:166-185
TAAATTAGATCTTGCCACGGGGACCTAGCT166TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU07_CCNP2731_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP2731.g1, mRNA sequence.
FG864714.1:207-226
TAAATTAGATCTTGCCACGGGGACCTAGCT207TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU07_CCNP6862_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP6862.g1, mRNA sequence.
FG870682.1:157-176
TAAATTAGATCTTGCCACGGGGACCTAGCT157TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU07_CCNP7362_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP7362.g1, mRNA sequence.
FG871466.1:209-228
TAAATTAGATCTTGCCACGGGGACCTAGCT209TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU07_CCNP11013_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP11013.g1, mRNA sequence.
FG875968.1:210-229
TAAATTAGATCTTGCCACGGGGACCTAGCT210TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU07_CCNP11764_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP11764.g1, mRNA sequence.
FG877263.1:188-207
TAAATTAGATCTTGCCACGGGGACCTAGCT188TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU07_CCNP13959_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP13959.g1, mRNA sequence.
FG881060.1:191-210
TAAATTAGATCTTGCCACGGGGACCTAGCT191TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU07_CCNP14069_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP14069.g1, mRNA sequence.
FG881247.1:205-224
TAAATTAGATCTTGCCACGGGGACCTAGCT205TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU07_CCNP15834_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP15834.g1, mRNA sequence.
FG884263.1:188-207
TAAATTAGATCTTGCCACGGGGACCTAGCT188TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU08_CCNS1042_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS1042.g1, mRNA sequence.
FG888880.1:166-185
TAAATTAGATCTTGCCACGGGGACCTAGCT166TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU08_CCNS14622_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS14622.g1, mRNA sequence.
FG896926.1:187-206
TAAATTAGATCTTGCCACGGGGACCTAGCT187TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU08_CCNS6729_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS6729.g1, mRNA sequence.
FG909535.1:206-225
TAAATTAGATCTTGCCACGGGGACCTAGCT206TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU08_CCNS6907_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS6907.g1, mRNA sequence.
FG909858.1:187-206
TAAATTAGATCTTGCCACGGGGACCTAGCT187TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU08_CCNS7437_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS7437.g1, mRNA sequence.
FG910795.1:207-226
TAAATTAGATCTTGCCACGGGGACCTAGCT207TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU09_CCNT3334_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT3334.g1, mRNA sequence.
FG919147.1:207-226
TAAATTAGATCTTGCCACGGGGACCTAGCT207TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU09_CCNT5204_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT5204.g1, mRNA sequence.
FG922250.1:209-228
TAAATTAGATCTTGCCACGGGGACCTAGCT209TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU09_CCNT15474_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT15474.g1, mRNA sequence.
FG937882.1:207-226
TAAATTAAATCTTGCCACGGGGACCTAGCT207TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU09_CCNT16257_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT16257.g1, mRNA sequence.
FG939301.1:193-212
TAAATTAGATCTTGCCACGGGGACCTAGCT193TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
UCRVU09_CCNT17209_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT17209.g1, mRNA sequence.
FG941031.1:206-225
TAAATTAGATCTTGCCACGGGGACCTAGCT206TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
Vigna angularis mRNA, clone: VES09D12.
HX945562.1:291-310
TAAATTAGATCTTGCCACGGGGACCAAGCT291TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAAAATGTCACCTGAAGCA
ZnF1121 Drought responsive ESTs from SSH library of Ziziphus nummularia (Burm.f.) Wight & Arn. seedlings Ziziphus nummularia cDNA, mRNA sequence.
JZ143597.1:237-256
AAAATTAAATCTTGCCACGTGGCCCTGGCT237TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAAAATGTCACCTGAGGCC
ZnF1122 Drought responsive ESTs from SSH library of Ziziphus nummularia (Burm.f.) Wight & Arn. seedlings Ziziphus nummularia cDNA, mRNA sequence.
JZ143598.1:179-198
AAAATTAGATCTTGCCACGTGGCCCTGGCT179TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAAAAAGTCACCTGAGGCC
Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
AP015040.1:1479524-1479543
TAAATTAGATCTTGCCACGGGGACCAAGCT1479524TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu05.
CP039354.1:1841443-1841462
TAAATTAGATCTTGCCACGGGGACCTAGCT1841443TTGGTGGAAGTTGTGGACCTTTCTTGATTGGTAGAATGTCACCTGAAGCA
Hibiscus tridactylites genome assembly, chromosome: 13.
OY288277.1:6595513-6595532
TAAATTAGATCTTGCCACGAGGCCCGAGCT6595513TTGGTGGAAGTTGTGGACCTTTCTTGATCGGTAGAAGGTCGTCGGAAGCG
MOPAP08TF MOP Vigna unguiculata cDNA 5', mRNA sequence.
FF538545.1:413-432
TGCTTCAGGTGACATTCTACCAATCAAGAA413AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
MOPAI77TF MOP Vigna unguiculata cDNA 5', mRNA sequence.
FF538859.1:402-421
TGCTTCAGGTGACATTCTACCAATCAAGAA402AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
MOPCI34TF MOP Vigna unguiculata cDNA 5', mRNA sequence.
FF542696.1:413-432
TGCTTCAGGTGACATTCTACCAATCAAGAA413AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
MOPF519TR MOP Vigna unguiculata cDNA 3', mRNA sequence.
FF549792.1:397-416
TGCTTCAGGTGACATTCTACCAATCAAGAA397AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
MOPF519TF MOP Vigna unguiculata cDNA 5', mRNA sequence.
FF551947.1:397-416
TGCTTCAGGTGACATTCTACCAATCAAGAA397AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
UCRVU04_CCNI11607_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI11607.b1, mRNA sequence.
FG810465.1:360-379
TGCTTCAGGTGACATTCTACCAATCAAGAA360AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
UCRVU04_CCNI11904_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI11904.b1, mRNA sequence.
FG811054.1:397-416
TGCTTCAGGTGACATTCTACCAATCAAGAA397AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
UCRVU04_CCNI12207_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI12207.b1, mRNA sequence.
FG811629.1:390-409
TGCTTCAGGTGACATTCTACCAATCAAGAA390AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
UCRVU04_CCNI4373_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI4373.b1, mRNA sequence.
FG817832.1:246-265
TGCTTCAGGTGACATTCTACCAATCAAGAA246AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
UCRVU04_CCNI5044_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI5044.b1, mRNA sequence.
FG818973.1:377-396
TGCTTCAGGTGACATTCTACCAATCAAGAA377AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
TSA: Sedum alfredii, clone Sa_Contig15631.
HE732736.1:202-221
TGCATCCGAAGATATCTTGCCTATCAAGAA202AGGTCCACAACTTCCACCAAAGCTCGGCCATCGCGGAAAGAGTTCTTGTC
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC H054H04, *** SEQUENCING IN PROGRESS ***, 92 unordered pieces.
AC272842.1:9400-9419
TGCTTCAGGTGACATTCTACCAATCAAGAA9400AGGTCCACAACTTCCACCAAAGCTAGGTCCCCGTGGCAAGATCTAATTTA
Solanum pinnatisectum cultivar CGN17745 chromosome 8.
CP047564.1:25680057-25680076
TGAACAACACTTTTCCCTTCATTGTTGGGT25680057AGGTCCACAACTTCCACCAATTTAGAAACATAATCTACCGCTACCAAAAT
Ziziphus jujuba cultivar Dongzao chromosome 1.
CP134451.1:44931993-44932012
GGCCTCAGGTGACATTCTACCAATCAAGAA44931993AGGTCCACAACTTCCACCAAAGCCAGGGCCACGTGGCAAGATCTAATTTT
Avena atlantica genome assembly, chromosome: 2A.
OU342734.1:286360448-286360467
AAATTACTTCCACTGCCAGAAGCAGGGTCT286360448AGGTCCACAACTTCCACCAATTGGTACTCTGGGGAAGTAGCCAGCAACCT
Hibiscus tridactylites genome assembly, chromosome: 11.
OY288275.1:90368637-90368656
CGCTTCCGACGACCTTCTACCGATCAAGAA90368637AGGTCCACAACTTCCACCAAAGCTCGGGCCTCGTGGCAAGATCTAATTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGGTGGAAGTTGTGGACCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGTGGAAGTTGTGGACCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.140 | 2.132 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGTGGAAGTTGTGGACCT&k=0&no_gap=0&offset=0&limit=50
2.760 | 0.619 | search_minus_done; http://172.18.8.135:50400/match?q=AGGTCCACAACTTCCACCAA&k=0&no_gap=0&offset=0&limit=10
2.770 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).