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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-08 18:19:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Lotus japonicus genomic DNA, chromosome 1, clone: LjT45O19, TM0174.
AP006097.1:11117-11136
AGATGATAACATAGGAACAAGCAAAATGCC11117TTTATCTTCAACAGGCATCCATCAGATCTTACACTGGATGGCTAGAAATA
Strigamia acuminata genome assembly, chromosome: 2.
OX442315.1:16445333-16445352
CATGCTGTGCAACAGGACGAATCTTCAATG16445333TTTATCTTCAACAGGCATCCAACACCCATAGGAATGAGTAATGATTCTTT
Poecilia reticulata genome assembly, chromosome: 2.
LR880646.1:27515439-27515458
GTGAGGGTGGGACTGGGGCAGGCGCATTTT27515439GGATGCCTGTTGAAGATAAAGGGCATTTTTAGGTGCTGCAATTTTGCAGC
Rana temporaria genome assembly, chromosome: 4.
LR991683.1:425660337-425660356
CTTTTCCCCAGCTACACTCTGCAACTATTG425660337GGATGCCTGTTGAAGATAAACGATTAGCTCTGCTGGTGAATTTGCATGCA
Fringilla coelebs genome assembly, chromosome: 3.
OY740726.1:36107561-36107580
GTAGCATAAGGAACATAGAAGAAAAGTGTG36107561GGATGCCTGTTGAAGATAAATACATAGTCTGAAACAAATTCTTAACTGGC
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:54159895-54159914
TATTTCTAGCCATCCAGTGTAGGATCTGAT54159895GGATGCCTGTTGAAGATAAAGGCATTTTGCTTGTTCCTATGTTATCATCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTATCTTCAACAGGCATCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTATCTTCAACAGGCATCC | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.089 | 0.081 | search_plus_done; http://172.18.8.135:50400/match?q=TTTATCTTCAACAGGCATCC&k=0&no_gap=0&offset=0&limit=50
0.121 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=GGATGCCTGTTGAAGATAAA&k=0&no_gap=0&offset=0&limit=48
0.124 | 0.003 | cgi_end;

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