GGGenome | Results

2025-04-07 21:01:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Micromys minutus genome assembly, chromosome: 19.
OZ004799.1:48334537-48334556

ACTTTAGTTAGTGAAATTTATAAATAAGGT48334537TTTATTTAGTTTCATACCCTCTACTGGACGTGTTAGACCAGCTGTTTTAT

KBrB028G12F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028G12, genomic survey sequence.
DX031551.1:452-471

TGTAAACCTAAAAAATGTAGTTTCATTTTT452TTTATTTAGTTTCATACCCTCGCAGTATATATATAAATTTATTGTTAGTG

KBrB030P19F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB030P19, genomic survey sequence.
DX033517.1:449-468

TGTAAACCTAAAAAATGTAGTTTCATTTTT449TTTATTTAGTTTCATACCCTCGCAGTATATATATAAATTTATTGTTAGTG

KBrB067H16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB067H16, genomic survey sequence.
DX061055.1:461-480

TGTAAACCTAAAAAATGTAGTTTCATTTTT461TTTATTTAGTTTCATACCCTCGCAGTATATATATAAATTTATTGTTAGTG

KBrB084M06R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB084M06, genomic survey sequence.
DX074172.1:461-480

TGTGAACCTAAAAAATGTAGTTTCATTTTT461TTTATTTAGTTTCATACCCTCGCAGTATATATATAAATTTATTGTTAGTG

2_Tcm_b3v08.
OE184875.1:23412-23431

AAGAGAATATAGCATTAAATGTTGTTCGGT23412TTTATTTAGTTTCATACCCTTAATTCCTAATTTGCTCCCAAGGAATAGAG

5_Tge_b3v08.
OE842329.1:81977-81996

ACACAAGAGATTTACTATTCCCTGTAGTTT81977TTTATTTAGTTTCATACCCTGAATTTGAAAGACCCTCTTAATTCTAAAAC

Apamea sordens genome assembly, chromosome: 25.
OX244010.1:8846193-8846212

GTGGTTCAATTTGATCACACGTGAAACAAT8846193TTTATTTAGTTTCATACCCTAAGGAACGAGCCAGCCCTCTGGTCACGTGA

Pyrausta despicata genome assembly, chromosome: 18.
OY992862.1:15022618-15022637

TCAGCAAAACACGTTAAGTGTTGTAATGAT15022618TTTATTTAGTTTCATACCCTTTCAATGGCGAATTAGTTATCGTTTGAAAT

Limanda limanda genome assembly, chromosome: 5.
OY754996.1:11206298-11206317

ACTCTAGGTGAATGTCACCTATATGGGTAC11206298AGGGTATGAAACTAAATAAATCAGCCTTTGCGTCTGTGCACTCATCCCTC

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:140171-140190

CACTAACAATAAATTTATATATATACTGCG140171AGGGTATGAAACTAAATAAAAAAAATGAAACTACATTTTTTAGGTTTACA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:140803-140822

CACTAACAATAAATTTATATATATACTGCG140803AGGGTATGAAACTAAATAAAAAAAATGAAACTACATTTTTTAGGTTTACA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:141399-141418

CACTAACAATAAATTTATATATATACTGCG141399AGGGTATGAAACTAAATAAAAAAAATGAAACTACATTTTTTAGGTTTACA

Parietaria judaica genome assembly, chromosome: 5.
OX940864.1:405964-405983

CATGCTAAGAAACAAAAACACTGTTCACCG405964AGGGTATGAAACTAAATAAAACCCAAATAAGGCTATTCTTGCAAAAAGCC

Parietaria judaica genome assembly, chromosome: 13.
OX940872.1:9543426-9543445

CAGCTAAGAAAGAAAAACATTGTTCACCCG9543426AGGGTATGAAACTAAATAAAAATCCAAATAAGGCTATTCTTGCAAAACGC

Apamea anceps genome assembly, chromosome: 24.
OX637524.1:7154156-7154175

TCACGTGACCAGAGGGCTGGCTCGTTCCTT7154156AGGGTATGAAACTAAATAAAATTGTTTCACATGTGATCAAAAAAATCCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

タブ区切りテキスト → 表示 | ダウンロード
エクセル等の表計算ソフトに直接コピペできます。
CSV形式 → 表示 | ダウンロード
エクセル等の表計算ソフトにて開くことができます。
BED形式 → リンク | ダウンロード
GFF形式 → リンク | ダウンロード
JSON形式 → リンク | ダウンロード

Debug Info:

0.009 | 0.009 | search_start;
0.205 | 0.196 | search_plus_done; http://172.18.8.135:50400/match?q=TTTATTTAGTTTCATACCCT&k=0&no_gap=0&offset=0&limit=50
0.246 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=AGGGTATGAAACTAAATAAA&k=0&no_gap=0&offset=0&limit=41
0.251 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).