GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-09 11:35:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BOGGI53TR BOGG Brassica oleracea genomic clone BOGGI53, genomic survey sequence.
BH582108.1:296-317
TGTGAAAGAAACATTTAAATAGTCAAACAA296AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:72901878-72901899
TGTGAAGGAAACATTTAAATAGTCAAACAA72901878AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41200366-41200387
TGTGAAAGAAACATTTAAATAGTCAAACAA41200366AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica rapa genome, scaffold: A10.
LR031577.1:17400144-17400165
TGTGAAAGAAACATTAAAATAGTCAAACAA17400144AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:72800558-72800579
TGTGAAGGAAACATTTAAATAGTCAAACAA72800558AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50467683-50467704
TGTGAAAGAAACATTTAAATAGTCAAACAA50467683AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:20137274-20137295
TGTGAAAGAAACATTAAAATAGTCAAACAA20137274AAGTCAACCCCTGTCCAAAACCTGATTCAGATTCTTTTGTTTATTTTCTGAT
BOGPO21TF BOGP Brassica oleracea genomic clone BOGPO21, genomic survey sequence.
BH421276.1:486-507
ATCAGAAAATAAACAAAAGAATCTGAATCA486GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTAAATGTTTCTTTCACA
BOT01-53O21TR BOT01 Brassica oleracea genomic clone BOT01-53O21, genomic survey sequence.
FI712616.1:185-206
ATCAGAAAATAAACAAAAGAATCTGAATCA185GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTAAATGTTTCTTTCACA
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:230315-230336
ATCAGAAAATAAACAAAAGAATCTGAATCA230315GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTTAATGTTTCTTTCACA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:470820-470841
ATCAGAAAATAAACAAAAGAATCTGAATCA470820GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTAAATGTTTCTTTCACA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:842569-842590
ATCAGAAAATAAACAAAAGAATCTGAATCA842569GGTTTTGGACAGGGGTTGACTTTTGTTTGACTATTTAAATGTTTCCTTCACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/aagtcaacccctgtccaaaacc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : aagtcaacccctgtccaaaacc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.124 | 0.115 | search_plus_done; http://172.18.8.135:50400/match?q=AAGTCAACCCCTGTCCAAAACC&k=0&no_gap=0&offset=0&limit=50
0.187 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTTTGGACAGGGGTTGACTT&k=0&no_gap=0&offset=0&limit=43
0.190 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).