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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 07:44:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Rangifer tarandus platyrhyncus genome assembly, chromosome: 8.
OX596092.1:2050662-2050679
GTTTAATGAACTTCAATGTGCCACTGTTCT2050662GATGGAAGCAAGTCGTCACATGCCTTAACAGAGTCACGCCATCCTGTT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a003L07_T7.
AM388641.1:350-367
ACAAAAGTGGTGAGCGGTTTCGAGGTATCA350GATGGAAGCAAGTCGTCAATGGATCTTGATGAGGATGAGAACAGCAGA
Brassica oleracea var. viridis mRNA, clone: KALE-107D03, 3' end sequence.
DK556125.1:378-395
ACAAAAGTGGTGAGCGGTTTCGAGGTATCA378GATGGAAGCAAGTCGTCAATGAATCTTGATGAGGATGAGAACAGCAGA
Brassica oleracea var. viridis mRNA, clone: KALE-144N06, 3' end sequence.
DK570494.1:254-271
ACAAAAGTGGTGAGCGGTTTCGAGGTATCA254GATGGAAGCAAGTCGTCAATGGATCTTGATGAGGATGAGAACAGCAGA
BOT01-10C19TF BOT01 Brassica oleracea genomic clone BOT01-10C19, genomic survey sequence.
FI682668.1:508-525
ACAAAAGTGGTGAGCGGTTTCGAGGTATCA508GATGGAAGCAAGTCGTCAATGGATCTTGATGAGGATGAGAACAGCAGA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50300843-50300860
ACAAAAGTGGTGAGCGGTTTCGAGGTATCA50300843GATGGAAGCAAGTCGTCAATGGATCTTGATGAGGATGAGAACAGCAGA
Ailanthus altissima genome assembly, chromosome: 2.
OX327684.1:28668156-28668173
ACATCGAGTGTTGATGGAACGAGTGTTGGC28668156GATGGAAGCAAGTCGTCAGCATCAGGAAAAGACGCCGGCGAAGATGAA
Chamaenerion angustifolium genome assembly, chromosome: 12.
OX328276.1:7088983-7089000
GGTTGTTTCATACTGTCTGCATATGGAAAT7088983GATGGAAGCAAGTCGTCAACTTCTTGGACGCAGAAGAGCATGGTTTGG
Asterias amurensis isolate Qingdao Taiping Cape Park chromosome 4.
CP134955.1:25254684-25254701
CTAGACTTAAGATCCTCAGTACCCCACCAA25254684GATGGAAGCAAGTCGTCACCAAGATGATCCGACAACGCCGGGCTGCTG
Asterias rubens genome assembly, chromosome: 8.
LR699099.1:19129560-19129577
CTAGGCTTAAGATCCTCAGTACCCCACCAA19129560GATGGAAGCAAGTCGTCACCAAGATGATCCGACAACGACGGGCTGCTG
Apotomis betuletana genome assembly, chromosome: 12.
OW026310.1:2067986-2068003
CTGCCCTGAGAAAAGCCGAGGATAGAGTAG2067986GATGGAAGCAAGTCGTCAACGATGCCGTCAAAGCGTTTCAGGACGGAC
Melolontha melolontha genome assembly, chromosome: 7.
OW285241.1:50747878-50747895
GTTGCTCTTGGATCGTCATGGAGTTGAGTC50747878GATGGAAGCAAGTCGTCACCTAATCAGTTCAAACTTTATAAAAAATGT
Anopheles maculipalpis genome assembly, chromosome: 3.
OX030896.1:12862430-12862447
TTCTCTCTTTTTTAGGTGAGTATGGTTTTG12862430GATGGAAGCAAGTCGTCAGAGATCGAACTCGTGGACGAATGATGAATG
Harmothoe impar genome assembly, chromosome: 16.
OX381719.1:63929897-63929914
AGTTTTAGGTGGACAATGAAAAAACTCAGA63929897GATGGAAGCAAGTCGTCATTATTGGAAAAGATCAGCATTTCATTAAGC
Empis stercorea genome assembly, chromosome: 2.
OX457086.1:61508590-61508607
ATTGCAAAAAGTATTTTTTTTTTCTTATTT61508590GATGGAAGCAAGTCGTCAAACTGGAAAATTTCCTTATAGCTATTACTT
Cervus elaphus genome assembly, chromosome: 23.
OU343100.1:80502108-80502125
GTAACAGGATGGCGTGACTCTTAAAATATG80502108TGACGACTTGCTTCCATCAGAACAGTGGCACATTGAACTTCATTAAAC
Rangifer tarandus platyrhyncus genome assembly, chromosome: 11.
OX459947.2:78703192-78703209
AACAGGATGGCGTGACTCTGTTAAGGCATG78703192TGACGACTTGCTTCCATCAGAACAGTGGCACATTGAAGTTCATTAAAC
Muntiacus reevesi genome assembly, chromosome: 2.
OZ005625.1:78977334-78977351
GTAACAGGATGGCGTGACTCTGTTAAAATG78977334TGACGACTTGCTTCCATCAGAACAGTGGCACATTGAACTTCATTAAAC
Scyliorhinus canicula genome assembly, chromosome: 11.
LR744040.1:36461274-36461291
TCTGCCACCGAGGATGATCTGGAACTCTCG36461274TGACGACTTGCTTCCATCACACTCGACCAGTCGCAACCACGCACACTC
DB025M10_R1.ab1 Brachypodium distachyon Bd21 BamHI BAC library Brachypodium distachyon genomic clone DB025M10, genomic survey sequence.
EI115754.1:262-279
TGGGTTGCAACTCTTGGCACAAACAATGTG262TGACGACTTGCTTCCATCTGATTGCTAGTTTTCACCTGTGTGTTATTT
DH142I01.R Brachypodium distachyon Bd21 BamH1 BAC library DB Brachypodium distachyon genomic clone DB142I01.R 3', genomic survey sequence.
GS180825.1:238-255
TGGGTTGCAACTCTTGGCACAAACAATGTG238TGACGACTTGCTTCCATCTGATTGCTAGTTTTCACCTGTGTGTTATTT
Cenchrus purpureus cultivar elephant grass chromosome B4.
CP053464.1:6140293-6140310
GGCGCCGGTTGCGGGACGGGCTGTAACTGG6140293TGACGACTTGCTTCCATCTCCGAGAAACCTTCCCGAGAGGGTTCTCCG
Lactuca saligna genome assembly, chromosome: 1.
OX465077.1:100477260-100477277
CCCCACCTAATATCGCACTAGAAAACCCTA100477260TGACGACTTGCTTCCATCCTGCTACCATCCTTCTCCGATGATCTGCTA
Marthasterias glacialis genome assembly, chromosome: 10.
OU452228.1:23369853-23369870
CAGCAGCACGGCGCTGCCTGATCATCTTCA23369853TGACGACTTGCTTCCATCTTGGCGGGGTGCTGAGGATCTTTAGCCTAG
Ischnura elegans genome assembly, chromosome: 5.
OV121104.1:126678225-126678242
ACCGACCTCAATTGTGTGGTTTGGCCACCC126678225TGACGACTTGCTTCCATCCATCTCTCAATGCTGCCGCACTGATTTGAG
Lochmaea capreae genome assembly, chromosome: 17.
OX421411.1:2178419-2178436
GTTAACAACTTAACCTTTCCATGGCTTGAT2178419TGACGACTTGCTTCCATCTCACCTTGTCCTTTGGCTCACCTTTCCAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gatggaagcaagtcgtca
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gatggaagcaagtcgtca | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.446 | 0.438 | search_plus_done; http://172.18.8.135:50400/match?q=GATGGAAGCAAGTCGTCA&k=0&no_gap=0&offset=0&limit=50
0.656 | 0.210 | search_minus_done; http://172.18.8.135:50400/match?q=TGACGACTTGCTTCCATC&k=0&no_gap=0&offset=0&limit=35
0.663 | 0.007 | cgi_end;

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