GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-07 10:02:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Human DNA sequence from clone RP11-62J10 on chromosome 1.
AL445426.20:93691-93709
AATTGTAAATCTGTAAGAAACTAGAACTTG93691GCCCTCATGGCTTCAGTTTGGACTGGTTTGAATTGGGTTGTCAATTTAA
Homo sapiens DNA, chromosome 1, nearly complete genome.
AP023461.1:111031998-111032016
AATTGTAAATCTGTAAGAAACTAGAACTTG111031998GCCCTCATGGCTTCAGTTTGGACTGGTTTGAATTGGGTTGTCAATTTAA
Homo sapiens isolate CHM13 chromosome 1.
CP068277.2:112247459-112247477
AATTGTAAATCTGTAAGAAACTAGAACTTG112247459GCCCTCATGGCTTCAGTTTGGACTGGTTTGAATTGGGTTGTCAATTTAA
Homo sapiens isolate NA24385 chromosome 1.
CP139523.1:112379088-112379106
AATTGTAAATCTGTAAGAAACTAGAACTTG112379088GCCCTCATGGCTTCAGTTTGGACTGGTTTGAATTGGGTTGTCAATTTAA
Homo sapiens isolate NA24385 chromosome 1.
CP139546.1:112490770-112490788
AATTGTAAATCTGTAAGAAACTAGAACTTG112490770GCCCTCATGGCTTCAGTTTGGACTGGTTTGAATTGGGTTGTCAATTTAA
Lutra lutra genome assembly, chromosome: 16.
LR738418.1:49433211-49433229
TATCACCCTATGACCCAGGATGAGTCATCG49433211GCCCTCATGGCTTCAGTTTCCTGTGGGGACAACCCCTGCCTGTGGCTCT
Chanos chanos genome assembly, chromosome: 1.
LR697106.1:22129883-22129901
TATCTCATCATTGTTGCTGACCAGGTGCAT22129883GCCCTCATGGCTTCAGTTTACAGTTTATACTTCAGGCAGGATAATGTAC
Erithacus rubecula genome assembly, chromosome: 13.
LR812116.1:5859471-5859489
ATTTGACAGATAGAGAATGACAAGATATTA5859471GCCCTCATGGCTTCAGTTTCACCACATCCAGACACAATAAAATATGAAT
Eukaryotic synthetic construct chromosome 1.
CP034512.1:112765184-112765202
AATTGTAAATCTGTAAGAAACTAGAACTTG112765184GCCCTCATGGCTTCAGTTTGGACTGGTTTGAATTGGGTTGTCAATTTAA
Homo sapiens clone RP11-115O19, WORKING DRAFT SEQUENCE, 22 unordered pieces.
AC013520.4:42598-42616
AATTGTAAATCTGTAAGAAACTAGAACTTG42598GCCCTCATGGCTTCAGTTTGGACTGGTTTGAATTGGGTTGTCAATTTAA
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:24035111-24035129
GAATGTCTTGATTATATACCGTGCGTGCAT24035111GCCCTCATGGCTTCAGTTTTAGTCCACGTGTCAAATGAGCAATTCATGC
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:25597374-25597392
GAATGTCTTGATTATATACCGTGCGTGCAT25597374GCCCTCATGGCTTCAGTTTTAGTCCACGTGTCAAATGAGCAATTCATGC
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:29726067-29726085
GAATGTCTTGATTATATACCGTGCGTGCAT29726067GCCCTCATGGCTTCAGTTTTAGTCCACGTGTCAAATGAGCAATTCATGC
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:24565578-24565596
GAATGTCTTGATTATATACCGTGCGTGCAT24565578GCCCTCATGGCTTCAGTTTTAGTCCACGTGTCAAATGAGCAATTCATGC
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141977.1:24497289-24497307
GAATGTCTTGATTATATACCGTGCGTGCAT24497289GCCCTCATGGCTTCAGTTTTAGTCCACGTGTCGAATGAGCAATTCATGC
Metridium senile genome assembly, chromosome: 8.
OX459102.1:14261363-14261381
GCGCAAAACAGGCTGTTGTCAAAATCACCT14261363GCCCTCATGGCTTCAGTTTGTGAAAATCCTGTTTTGAACCACGCATTTG
Scyliorhinus canicula genome assembly, chromosome: 1.
LR744030.1:278808928-278808946
ACTGAAGCCATGAGGGGTCCCCATTGATAA278808928AAACTGAAGCCATGAGGGCCCCTCCCCCCTCCCAGTCTTGCCCAAATCA
17000532615867 GRN_EB Homo sapiens cDNA 5', mRNA sequence.
CN287539.1:150-168
TTAAATTGACAACCCAATTCAAACCAGTCC150AAACTGAAGCCATGAGGGCCAAGTTCTAGTTTCTTACAGATTTACAATT
Homo sapiens clone RP11-2K19, LOW-PASS SEQUENCE SAMPLING.
AC021896.2:25252-25270
TTAAATTGACAACCCAATTCAAACCAGTCC25252AAACTGAAGCCATGAGGGCCAAGTTCTAGTTTCTTACAGATTTACAATT
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:5767467-5767485
GCATGAATTGCTCATTTGACACGTGGACTA5767467AAACTGAAGCCATGAGGGCATGCACGCACGGTATATAATCAAGACATTC
Malus domestica genome assembly, chromosome: 8.
OU696684.1:5504152-5504170
GCATGAATTGCTCATTTGACACGTGGACTA5504152AAACTGAAGCCATGAGGGCATGCACGCACGGTATATAATCAAGACATTC
Malus domestica genome assembly, chromosome: 8.
OU744998.1:5765101-5765119
GCATGAATTGCTCATTTGACACGTGGACTA5765101AAACTGAAGCCATGAGGGCATGCACGCACGGTATATAATCAAGACATTC
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:5970392-5970410
GCATGAATTGCTCATTTGACACGTGGACTA5970392AAACTGAAGCCATGAGGGCATGCACGCACGGTATATAATCAAGACATTC
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:5390371-5390389
GCATGGATTGCTCATCTGACACGTGGACTA5390371AAACTGAAGCCATGAGGGCATGCACGCACGGTATATAATAAAGACATTC
Crataegus laevigata genome assembly, chromosome: 12.
OY756949.1:6305450-6305468
GCATGAATTGCTCATTTGACACGTGGACTA6305450AAACTGAAGCCATGAGGGCATGCACGCACAGTATATAATCAAGACATTC
Pyrus communis genome assembly, chromosome: 15.
OY757082.1:4276942-4276960
GCATGAATTGCTCATTTGACACGTGGACTA4276942AAACTGAAGCCATGAGGGCATGCACGCACAGTACATAATCAAGACATTC
Cordilura impudica genome assembly, chromosome: 1.
OY821517.1:220203842-220203860
TGAGTAATTTAACTGAACAAGATTTCTTAA220203842AAACTGAAGCCATGAGGGCAAAAAGGTGGTGTTAGCAGACAAAAAAGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/gccctcatggcttcagttt
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : gccctcatggcttcagttt | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=GCCCTCATGGCTTCAGTTT&k=0&no_gap=0&offset=0&limit=50
0.192 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=AAACTGAAGCCATGAGGGC&k=0&no_gap=0&offset=0&limit=34
0.199 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).