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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 04:45:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

46RDOAG_UP_047_D06_31DEC2004_042 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
EE533634.1:315-332
GCAAACGAAATGGAGAGGTCAATGGGGTTG315TTACCGCTAGTGAACTCGCTAAGCTAAAAGAATCACTTGAGGAAGAAA
BNARO2GH_T3_011_E11_15DEC2006_087 Brassica napus BNARO2GH Brassica napus cDNA 5', mRNA sequence.
ES911566.1:533-550
GCAAACGCAATGGAGAGGTCAATGGGGTTG533TTACCGCTAGTGAACTCGCTAAGCTAAAAGAATCACTTGGGGAAGAAA
BOT01-65H5TF BOT01 Brassica oleracea genomic clone BOT01-65H5, genomic survey sequence.
FI719897.1:155-172
GTTACTTTGCATTGCAGGTCAATGGGGTTG155TTACCGCTAGTGAACTCGCTAAGCTAAAAGAATCACTTGAGGAAGAAA
BOT01-117M5TR BOT01 Brassica oleracea genomic clone BOT01-117M5, genomic survey sequence.
FI760531.1:156-173
GTTACTTTGCATTGCAGGTCAATGGGGTTG156TTACCGCTAGTGAACTCGCTAAGCTAAAAGAATCACTTGAGGAAGAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A10 clone KBrB119O22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234732.1:73188-73205
GTTACTTTGCATTGCAGGTCAATGGGGTTG73188TTACCGCTAGTGAACTCGCTAAGCTAAAAGGATCACTTGAGGAAGAAA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69474890-69474907
GTTACTTTGCATTGCAGGTCAATGGGGTTG69474890TTACCGCTAGTGAACTCGCTAAGCTAAAAGAATCACTTGAGGAAGAAA
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41555738-41555755
GTTACTTTGCATTGCAGGTCAATGGGGTTG41555738TTACCGCTAGTGAACTCGCTAAGCTAAAAGAATCACTTGAGGAAGAAA
Brassica rapa genome, scaffold: A09.
LR031568.1:57598860-57598877
GTTACTTTGCATTGCAGGTCAATGGGGTTG57598860TTACCGCTAGTGAACTCGCTAAGCTAAAAGAATCACTTGAGGAAGAAA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50793500-50793517
GTTACTTTGCATTGCAGGTCAATGGGGTTG50793500TTACCGCTAGTGAACTCGCTAAGCTAAAAGAATCACTTGAGGAAGAAA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:68122345-68122362
GTTACTTTGCATTGCAGGTCAATGGGGTTG68122345TTACCGCTAGTGAACTCGCTAAGCTAAAAGAATCACTTGAGGAAGAAA
Cenchrus americanus genome assembly, chromosome: PMC23DB3.
OX387241.1:228523533-228523550
GCGGACTCCCCATTTTCGCATCACGCCCGT228523533TTACCGCTAGTGAACTCGTTGCGTTGATCTCTGCCGCTACTGCTACAA
Cenchrus americanus genome assembly, chromosome: Pg3.
OZ001399.1:241985658-241985675
GCGGACTCCCCATTTTCGCATCACGCCCGT241985658TTACCGCTAGTGAACTCGTTGCGTTGATCTCTGCCGCTACTGCTACAA
Cenchrus americanus genome assembly, chromosome: Pg3.
OZ001407.1:247648571-247648588
GCGGACTCCCCATTTTCGCATCACGCCCGT247648571TTACCGCTAGTGAACTCGTTGCGTTGATCTCTGCCGCTACTGCTACAA
Ichneumon xanthorius genome assembly, chromosome: 4.
OU824203.1:14508017-14508034
TTAAAGGATTCCAGATTCAAAGTAACAATG14508017TTACCGCTAGTGAACTCGATGGGTCTTAAAGTTCGAGCCATTATTGTA
Amblyteles armatorius genome assembly, chromosome: 4.
OW121689.1:9393235-9393252
TTAAAAGATTCCAGATTCAAAGTAACAATG9393235TTACCGCTAGTGAACTCGATGGGTCTTAAAGTTCGAGCCATTATTGTA
Meconema thalassinum genome assembly, chromosome: 2.
OX336390.1:400808119-400808136
CACCCTGGATATTGCTATACCCTCAAGGGC400808119TTACCGCTAGTGAACTCGGGAATTTAATGCCTCGAGGAATTCCACCAA
Crepidodera aurea genome assembly, chromosome: 1.
OX439472.1:93107377-93107394
ACAAAGTAACAGTACGTAACAATATATTGA93107377TTACCGCTAGTGAACTCGATGTTGCCTCTATTCATATATACAGCATCC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5698.
FX692565.1:1336-1353
TTTCTTCCTCAAGTGATCCTTTTAGCTTAG1336CGAGTTCACTAGCGGTAACAACCCCATTGACCTCTCCATTGCGTTTGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6728.
FX726359.1:1133-1150
TTTCTTCCTCAAGTGATTCTTTTAGCTTAG1133CGAGTTCACTAGCGGTAACAACCCCATTGACCTCTCCATTGCGTTTGC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:121214-121231
TTTCTTCCCCAAGTGATTCTTTTAGCTTAG121214CGAGTTCACTAGCGGTAACAACCCCATTGACCTGCAATGCAAAGTAAC
Polygonum maritimum genome assembly, chromosome: 2.
OZ002729.1:33864856-33864873
ATAGCCTCGGGTGACTTTGGATGGTAAAAG33864856CGAGTTCACTAGCGGTAACACCGATGGTTTCAAAATAGGGTTGTTTCA
Exephanes ischioxanthus genome assembly, chromosome: 2.
OY294016.1:16248515-16248532
TACAATAATGGCTCGAACGTTAAGACCCAT16248515CGAGTTCACTAGCGGTAACATTGTTACTTTGAATCTGGAATCCTTTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ttaccgctagtgaactcg
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ttaccgctagtgaactcg | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.315 | 0.306 | search_plus_done; http://172.18.8.135:50400/match?q=TTACCGCTAGTGAACTCG&k=0&no_gap=0&offset=0&limit=50
0.346 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=CGAGTTCACTAGCGGTAA&k=0&no_gap=0&offset=0&limit=33
0.349 | 0.004 | cgi_end;

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