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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-20 07:25:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sciurus carolinensis genome assembly, chromosome: 12.
LR738602.1:49084318-49084337
CTATTCAAAATTTAGAATTAACTGGTCTGC49084318TTTCCCTCACTTCCACCATCACTAAGTATTTACAGTCTTTACAAAAACTT
Sciurus carolinensis genome assembly, chromosome: Y.
LR738610.1:3862503-3862522
GCTATTTAAAATTCAGAATTAATGGTCTGC3862503TTTCCCTCACTTCCACCATCACTAAGTATTTACAATCTTTACAAAAACTT
Sciurus vulgaris genome assembly, chromosome: 16.
LR738627.1:67633165-67633184
CTATTCAAAATTTAGAATTAACTGGTCTGC67633165TTTCCCTCACTTCCACCATCACTAGGTATTTACAATCTTTACAAAAACTT
Onychomys torridus genome assembly, chromosome: 15.
LR877202.1:43371942-43371961
GAAGGCAGTAGGGGAAAGGGGGAGGGTATC43371942TTTCCCTCACTTCCACCATCATACCTCTGAAAGGGAGGCAGTACTAGCGT
Onychomys arenicola genome assembly, chromosome: 15.
OX460361.1:43056182-43056201
GAAGGCAGTAGGGGAAAGGGGGAGGGCATC43056182TTTCCCTCACTTCCACCATCATACCTCTGAAAGGGAGGCAGTACTAGCGT
Onychomys leucogaster genome assembly, chromosome: 15.
OX460385.1:43496088-43496107
GAAGGCAGTAGGGGAAAAGGGGAGGGCATC43496088TTTCCCTCACTTCCACCATCATACCTCTGAAAGGGAGGCGGTACTAGCGT
Onychomys leucogaster genome assembly, chromosome: 15.
OX460432.1:43790103-43790122
GAAGGCAGTAGGGGAAAGGGGGAGGGCATC43790103TTTCCCTCACTTCCACCATCATACCTCTGAAAGGGAGGCGGTACTAGCGT
Onychomys arenicola genome assembly, chromosome: 15.
OX460456.1:45510874-45510893
GAAGGCAGTAGGGGAAAGGGGGAGGGCATC45510874TTTCCCTCACTTCCACCATCATACCTCTGAAAGGGAGGCAGTACTAGCGT
Onychomys torridus genome assembly, chromosome: 15.
OX460896.1:43371942-43371961
GAAGGCAGTAGGGGAAAGGGGGAGGGTATC43371942TTTCCCTCACTTCCACCATCATACCTCTGAAAGGGAGGCAGTACTAGCGT
Micromys minutus genome assembly, chromosome: 11.
OZ004791.1:31730090-31730109
TTCCTACCTTCCTTCCTCCCTCTCTCCCTC31730090TTTCCCTCACTTCCACCATCCCTCCTTCCCTCCCTCTTTCTCCCTCCCTC
Meles meles genome assembly, chromosome: 4.
OV277444.1:151315222-151315241
CCCTGAAGGCAGGCTGCCTGCTCAATCTCC151315222TTTCCCTCACTTCCACCATCTAACCCATCCCCAGGCACACAGCATTCCCA
mte1-26I18FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR306180.1:111-130
GCTTCATCATTCTTACTATATCGATTTCCC111TTTCCCTCACTTCCACCATCCGTGATATTCAAACTCTTCTGAGGATCTTC
Medicago truncatula clone mth2-24m24, complete sequence.
AC124952.15:25181-25200
GCTTCATCATTCTTACTATATCGATTTCCC25181TTTCCCTCACTTCCACCATCCGTGATATTCAAACTCTTCTGAGGATCTTC
M.truncatula DNA sequence from clone MTH2-3H12 on chromosome 3.
CT954236.4:109854-109873
GCTTCATCATTCTTACTATATCGATTTCCC109854TTTCCCTCACTTCCACCATCCGTGATATTCAAACTCTTCTGAGGATCTTC
M.truncatula DNA sequence from clone MTH2-172L14 on chromosome 3.
CU062477.6:2046-2065
GCTTCATCATTCTTACTATATCGATTTCCC2046TTTCCCTCACTTCCACCATCCGTGATATTCAAACTCTTCTGAGGATCTTC
Medicago lupulina genome assembly, chromosome: 6.
OY283144.1:18146815-18146834
GCTTCATCATTCTTACTATATCGATTTCCC18146815TTTCCCTCACTTCCACCATCCGTGATATTCAAACTCTTCTGAGGAGCTTC
Inga laurina genome assembly, chromosome: 7.
OY979707.1:48472768-48472787
AGAACTACTAATCACTTGTGGCACTTTCCA48472768TTTCCCTCACTTCCACCATCTCCCTTCTAGGCATGCTTGCTTTTCGTTCT
Anopheles stephensi strain SDA-500 chromosome 2L.
CP032233.1:11556072-11556091
AGGTTGCATTAAATTTATTTATTTTATTTT11556072TTTCCCTCACTTCCACCATCATCCCCCATCATCATGCAGCTGTTAATTAA
Sympetrum striolatum genome assembly, chromosome: 3.
OX388343.1:47689678-47689697
CACGCCTTCCAGAATTCTTCTTCCCTCCTC47689678TTTCCCTCACTTCCACCATCCGATCGAAATAAAAGAAATCCCTTTCTAAT
Sciurus vulgaris genome assembly, chromosome: 2.
LR738612.1:81045043-81045062
TAAGTTTTTTTAAGATTGTAAATACTTAGT81045043GATGGTGGAAGTGAGGGAAATCAGAGCAGTTAATTCTAAATTTTGAACAG
EST332579 KV3 Medicago truncatula cDNA clone pKV3-15A17, mRNA sequence.
AW773593.1:106-125
GAAGATCCTCAGAAGAGTTTGAATATCACG106GATGGTGGAAGTGAGGGAAAGGGAAATCGATATAGTAAGAATGATGAAGC
EST1224736 MTY Medicago truncatula cDNA clone MTYA951, mRNA sequence.
DW015775.1:392-411
GAAGATCCTCAGAAGAGTTTGAATATCACG392GATGGTGGAAGTGAGGGAAAGGGAAA
MBEJT59TRB mth2 Medicago truncatula genomic clone 70J22, genomic survey sequence.
CG923043.1:147-166
GAAGATCCTCAGAAGAGTTTGAATATCACG147GATGGTGGAAGTGAGGGAAAGGGAAATCGATATAGTAAGAATGATGAAGC
MBEIK14TR mth2 Medicago truncatula genomic clone 62D3, genomic survey sequence.
CG926391.1:147-166
GAAGATCCTCAGAAGAGTTTGAATATCACG147GATGGTGGAAGTGAGGGAAAGGGAAATCGATATAGTAAGAATGATGAAGC
MBELG81TF mth2 Medicago truncatula genomic clone 79N17, genomic survey sequence.
CG967748.1:152-171
GAAGATCCTCAGAAGAGTTTGAATATCACG152GATGGTGGAAGTGAGGGAAAGGGAAATCGATATAGTAAGAATGATGAAGC
MBEFI96TR mth2 Medicago truncatula genomic clone 44O23, genomic survey sequence.
CG970799.1:111-130
GAAGATCCTCAGAAGAGTTTGAATATCACG111GATGGTGGAAGTGAGGGAAAGGGAAATCGATATAGTAAGAATGATGAAGC
Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-200J18.
CT025687.4:242602-242621
GAAGATCCTCAGAAGAGTTTGAATATCACG242602GATGGTGGAAGTGAGGGAAAGGGAAATCGATATAGTAAGAATGATGAAGC
Medicago truncatula clone mth2-18o15, complete sequence.
AC131239.20:52911-52930
GAAGATCCTCAGAAGAGTTTGAATATCACG52911GATGGTGGAAGTGAGGGAAAGGGAAATCGATATAGTAAGAATGATGAAGC
Medicago truncatula clone mth2-150a17, complete sequence.
AC157538.19:46039-46058
GAAGATCCTCAGAAGAGTTTGAATATCACG46039GATGGTGGAAGTGAGGGAAAGGGAAATCGATATAGTAAGAATGATGAAGC
Vicia faba genome assembly, chromosome: 2.
OX451737.1:537035491-537035510
GAAGATCCTCAGAAGAGTTTGAATATCACC537035491GATGGTGGAAGTGAGGGAAAAGGTAATCAACATTTCGATAGTGATGAAGC
Inga oerstediana genome assembly, chromosome: 8.
OY723406.1:22204365-22204384
AGAACGAAAAGCAAGCATGCCTAGAAAGGA22204365GATGGTGGAAGTGAGGGAAATGTAAAGAGCCACAAGGGATTAGTAGTTCT
Helleia helle genome assembly, chromosome: 21.
OY971435.1:2292166-2292185
ATAAGGTTGTTTGACGGAAGAAACAAACAG2292166GATGGTGGAAGTGAGGGAAAGAAAGAAGTGGAGAAAACCTTATTTTATTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/tttccctcacttccaccatc
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : tttccctcacttccaccatc | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.188 | 0.179 | search_plus_done; http://172.18.8.135:50400/match?q=TTTCCCTCACTTCCACCATC&k=0&no_gap=0&offset=0&limit=50
0.331 | 0.143 | search_minus_done; http://172.18.8.135:50400/match?q=GATGGTGGAAGTGAGGGAAA&k=0&no_gap=0&offset=0&limit=31
0.339 | 0.009 | cgi_end;

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