GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:21:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB131D06F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB131D06, genomic survey sequence.
ED537836.1:781-800
AATAATTTATTAACAGAAGCTTCATTGAGG781AAAAAAGGAGACCTGTCCTGGCATAACTTCACCATTAGTACCACTGATGT
Asterias rubens genome assembly, chromosome: 9.
LR699100.1:11376153-11376172
GAGATCATTTAAAATAACCCTTTTTCAAAA11376153AAAAAAGGAGACCTGTCCTGTAAAAAGGAAGCGGGCGGGCAGGGACGCTA
ia74h03.b1 WGS-ZmaysF (JM107 adapted methyl filtered) Zea mays genomic clone ia74h03 5', genomic survey sequence.
BZ316660.1:523-542
AACTATGAATGTGTGACCAAAGAAATTATA523CAGGACAGGTCTCCTTTTTTGACAGCTAAATTTAGTTCTCCTTTTTTACA
Brassica napus gln gene for plastid glutamine synthetase, exons 1-12.
AJ271909.1:3343-3362
ACATCAGTGGTACTAATGGTGAAGTTATGC3343CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:13409238-13409257
ACATCAGTGGTACTAATGGTGAAGTTATGC13409238CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica napus genome assembly, chromosome: A04.
HG994358.1:7783099-7783118
ACATCAGTGGTACTAATGGTGAAGTTATGC7783099CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica rapa genome, scaffold: A04.
LR031576.1:7060009-7060028
ACATCAGTGGTACTAATGGTGAAGTTATGC7060009CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:7303726-7303745
ACATCAGTGGTACTAATGGTGAAGTTATGC7303726CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAAAAGGAGACCTGTCCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAAAAGGAGACCTGTCCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.131 | 0.122 | search_plus_done; http://172.18.8.135:50400/match?q=AAAAAAGGAGACCTGTCCTG&k=0&no_gap=0&offset=0&limit=50
0.167 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=CAGGACAGGTCTCCTTTTTT&k=0&no_gap=0&offset=0&limit=48
0.172 | 0.004 | cgi_end;

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