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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 20:33:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Phalacrocorax aristotelis genome assembly, chromosome: 2.
OX451223.1:86318262-86318281
AAAACCTGGAAAAGAGTATTTAAGGAGTGG86318262AAAACAAATCCAGGGAAGCAGCCCATTCAACAATGCTGCTTTGCTTCTGC
Psittacula echo genome assembly, chromosome: 14.
OY725434.1:9134442-9134461
CTGTTGTTCAGTGGAAAAGGCTTAAAAAGC9134442AAAACAAATCCAGGGAAGCAACTTGTTCCAGGCAGAACTCAGTGTTGGTG
Chroicocephalus ridibundus genome assembly, chromosome: 2.
OZ001734.1:88731659-88731678
AAAATTGGAAAACAGTATTTAAGACGACAA88731659AAAACAAATCCAGGGAAGCAGCCCATTCAGCAGTGTGTTGTACTGCAATT
GA__Ea0033F02f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0033F02f, mRNA sequence.
BE052517.2:214-233
AAACATCAAAAGTATAGGTAGGCAACTATG214AAAACAAATCCAGGGAAGCAGCATTGACAATATCTAAATCCGATACAATT
GA__Ea0007I11r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0007I11r, mRNA sequence.
BM358306.1:163-182
AAACATCAAAAGTATAGGTAGGCAACTATG163AAAACAAATCCAGGGAAGCAGCATTGACAATATCTAAATCCGATACAATT
GR__Ea01I23.r GR__Ea Gossypium raimondii cDNA clone GR__Ea01I23 3', mRNA sequence.
CO084769.1:17-36
TTTTTTCTTTTATTTG17AAAACAAATCCAGGGAAGCAGCATTGAACAACCTTGAACCACATACATGT
GR__Eb023D02.f GR__Eb Gossypium raimondii cDNA clone GR__Eb023D02 5', mRNA sequence.
CO119965.1:34-53
CATAAAACATCATACGTATAGGCAACTATG34AAAACAAATCCAGGGAAGCAGCATTGAACAAGATAGAACCACATACATGT
COT_FI_A08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AF041258) 26S proteasome subunit 7 [Prunus persica], mRNA sequence.
DT052866.1:158-177
CATAAAACATCATAAGTATAGGCAACTATG158AAAACAAATCCAGGGAAGCAGCATTGAACAAGATAGAACCACATACATGT
COT_FJ_A07 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to unknown, mRNA sequence.
DT052939.1:170-189
AAAAGCATACATAAGTATAGGCAAACTATG170AAAACAAATCCAGGGAAGCAGACATTGAACAAGACTAGAACCACATACAA
COT_FJ_A07 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY196152.1:170-189
AAAAGCATACATAAGTATAGGCAAACTATG170AAAACAAATCCAGGGAAGCAGACATTGAACAAGACTAGAACCACATACAA
rcrycc0_0011_C10.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO107377.1:118-137
CATAAAACATCATAAGTATAGGCAACTATG118AAAACAAATCCAGGGAAGCAGCATTGAACAAGATAGAACCACATACATGT
H02_422072.86.S1104082373.anther-SP5750 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK703367.1:140-159
CATCAAACATCAAAAGTATAGGCAACTATG140AAAACAAATCCAGGGAAGCAGCATTGACAATATCTAAATCCGATACAATT
A08_51603.8.S1108242123.LDYN1-7496.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ110871.1:140-159
CATCAAACATCAAAAGTATAGGCAACTATG140AAAACAAATCCAGGGAAGCAGCATTGACAATATCTAAATCCGATACAATT
D08_51748.44.S1108273291.LDYN1-12140.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ114552.1:154-173
CATAAAACATCATAAGTATAGGCAACTATG154AAAACAAATCCAGGGAAGCAGCATTGAACAAGATAGAACCACATACATGT
Gossypium raimondii isolate D5-4 chromosome D5_10.
CP032562.1:58076165-58076184
CATAAAACATCATAAGTATAGGCAACTATG58076165AAAACAAATCCAGGGAAGCAGCATTGAACAAGATAGAACCACATACATGT
Gossypium turneri isolate D10-2 chromosome D10_10.
CP032580.1:59760514-59760533
CATAAAACATCAAAAGTATAGGCAACCATG59760514AAAACAAATCCAGGGAAGCAGCATTGAACAAGATAGAACCACATACATGT
Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:117587845-117587864
AAACATCAAAAGTATAGGTAGGCAACTATG117587845AAAACAAATCCAGGGAAGCAGCATTGACAATATCTAAATCCGATACAATT
Gossypium rotundifolium isolate GPK201 chromosome 10.
CP106731.1:163233020-163233039
CATAAAACATCAAAAGCATAGGCAACTATG163233020AAAACAAATCCAGGGAAGCAGCCTTGACAATATCTAAATCCGATACAATT
Trifolium repens isolate ACLI19 chromosome 07_0cc.
CP125848.1:38350248-38350267
CCGCCTTGCTTTTATTCAGGTATGAAGATA38350248AAAACAAATCCAGGGAAGCATGTTTGCCTTGTTAATGTATCACTTTATTG
Leucozona laternaria genome assembly, chromosome: 4.
OW026369.1:58658961-58658980
AAATACACAGATTAGATGATAAAAGACACA58658961AAAACAAATCCAGGGAAGCAATCAAAGCAAACCGAAGTCAGTAACTATAT
Eupeodes corollae genome assembly, chromosome: 2.
OX244024.1:129243064-129243083
CGAAGCACCACAGCAAAAGATGATTAAAAA129243064AAAACAAATCCAGGGAAGCAAAAATTGAATTTAGGTTACATTACTGCAGG
Spisula subtruncata genome assembly, chromosome: 12.
OY787671.1:28520156-28520175
GTCAAAACGCACCAATACCTTTCAAGGAAT28520156AAAACAAATCCAGGGAAGCATGCCCCCGGACCCCTCTACTTCTTTCATCT
Aquila chrysaetos chrysaetos genome assembly, chromosome: 18.
LR606198.1:4308867-4308886
GTAGAAGTAAAACATCATTGTTGAATGGGC4308867TGCTTCCCTGGATTTGTTTTCCTCTTCTTAAATACTGTTTTCCAGTTTTT
Accipiter gentilis genome assembly, chromosome: 20.
OV839381.1:4157180-4157199
GTAGAAGTAAAACATCACTGTTGAATGGGC4157180TGCTTCCCTGGATTTGTTTTCCTCTTCTTAAATACTGTTTTTCAATTTTT
Haliaeetus albicilla genome assembly, chromosome: 21.
OX381658.1:4047878-4047897
GTAGAAGTAAAACATCATTGTTGAATGGGC4047878TGCTTCCCTGGATTTGTTTTCCTCTTCTTAAATACTGTTTTTCAATTTTT
Phalacrocorax carbo genome assembly, chromosome: 2.
OY997602.1:82265858-82265877
GCAGAAGCAAAGCAGCATTGTTGAATGGGC82265858TGCTTCCCTGGATTTGTTTTCCACTCCTTAAATATTCTTTTCCAGGTTTT
Larus fuscus genome assembly, chromosome: 2.
OZ010754.1:80956687-80956706
AATTGCAGTACAACACACTGCTGAATGGGC80956687TGCTTCCCTGGATTTGTTTTCGTCTTCTTAAATACTGTTTTCCAATTTTT
GA__Eb0040B21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040B21f, mRNA sequence.
BG447004.1:59-78
AATTGTATCGGATTTAGATATTGTCAATGC59TGCTTCCCTGGATTTGTTTTCATAGTTGCCTACCTATACTTTTGATGTTT
CM095D06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR461249.1:355-374
AATTGTATCGGATTTAGATATTGTCAATGC355TGCTTCCCTGGATTTGTTTTCATAGTTGCCTATACTTTTGATGTTTGATG
GH_TMIRS_212_H03 Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW517591.1:216-235
AATTGTATCGGATTTAGATATTGTCAATGC216TGCTTCCCTGGATTTGTTTTCATAGTTGCCTATGCTTTTGATGTTTGATG
EST008944 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 40-M11 5', mRNA sequence.
GR715744.1:763-782
ACATGTATGTGGTTCTATCTTGTTCAATGC763TGCTTCCCTGGATTTGTTTTCATAGTTGCCTACTTATGATGTTTTATGTT
B07-105B07 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK793064.1:692-711
ACATGTATGTGGTTCTATCTTGTTCAATGC692TGCTTCCCTGGATTTGTTTTCATAGTTGCCTATACTTATGATGTTTTATG
Gossypium herbaceum isolate Zhongcao1 chromosome 10.
CP106689.1:4827713-4827732
AATTGTATCGGATTTAGATATTGTCAATGC4827713TGCTTCCCTGGATTTGTTTTCATAGTTGCCTACCTATACTTTTGATGTTT
Tridacna crocea genome assembly, chromosome: 13.
OX031068.1:8116264-8116283
TTATATCGCAGCGGCAAGAGATCCTGTCCA8116264TGCTTCCCTGGATTTGTTTTTCCAGTACTGCACACAATTCTTTTTCCAAG
Tridacna crocea genome assembly, chromosome: 13.
OX031068.1:8249206-8249225
TTATATCGCAGCGGCAAGAGATCCTGTCCA8249206TGCTTCCCTGGATTTGTTTTTCCAGTACTGCACACAATTCTTTTTCCAAG
Tridacna crocea genome assembly, chromosome: 13.
OX031068.1:8390063-8390082
TTATATCGCAGCGGCAAGAGATCCTGTCCA8390063TGCTTCCCTGGATTTGTTTTTCCAGTACTGCACACAATTCTTTTTCCAAG
Tridacna crocea genome assembly, chromosome: 13.
OX031068.1:8533298-8533317
TTATATCGCAGCGGCAAGAGATCCTGTCCA8533298TGCTTCCCTGGATTTGTTTTTCCAGTACTGCACACAATTCTTTTTCCAAG
Tridacna crocea genome assembly, chromosome: 13.
OX031068.1:8686404-8686423
TTATATCGCAGCGGCAAGAGATCCTGTCCA8686404TGCTTCCCTGGATTTGTTTTTCCAGTACTGCACACAATTCTTTTTCCAAG
Agapetus fuscipes genome assembly, chromosome: 23.
OX637355.1:14995973-14995992
TAGCGTCATGCTACCATTAATAGTGTGAAG14995973TGCTTCCCTGGATTTGTTTTCGAACCATCGACATCTTCGAACTAGGGTAA

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