GGGenome | Results

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2025-04-09 16:41:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Citrus reticulata microsatellite DNA, clone CiO1HO5.
AJ567401.1:111-133

CTTTCCTTTCTTTTCTTTTACCCTCCTTAA111AAAACAACCAAAAGGACAAGATTTAAAGATAAAACAGAGAGAGAGAGAGAGAG

CR05-C1-100-051-H07-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY762233.1:70-92

CTCTCTCTCTCTCTCTCTGTTTTATCTTTA70AATCTTGTCCTTTTGGTTGTTTTTTAAGGAGGGTAAAAGAAAAGAAAGGAAAG

CR05-C1-102-042-D07-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY769458.1:29-51

CCCACGCGTCCGCTCTGTTTTATCTTTA29AATCTTGTCCTTTTGGTTGTTTTTTAAGGAGGGTAAAAGAAAAGAAAGGAAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=AAAACAACCAAAAGGACAAGATT&k=0&no_gap=0&offset=0&limit=50
0.244 | 0.137 | search_minus_done; http://172.18.8.135:50400/match?q=AATCTTGTCCTTTTGGTTGTTTT&k=0&no_gap=0&offset=0&limit=49
0.245 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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