GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:23:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Valencia hispanica genome assembly, chromosome: 21.
OY747720.1:26939719-26939738
CCTCCTGGGTGTTTATGTGCACGCATAAAA26939719AAAACAACGTATTCTTCTCAGCATAAACATGCCGGGGTATTTAAAAAAAA
Fissipunctia ypsillon genome assembly, chromosome: 26.
OX387670.1:5334404-5334423
TTTTCACAGCAAGGTCATTATATTTAAAAA5334404AAAACAACGTATTCTTCTCAAGGGGTAGGTAGCAGAACACAGGCAACAGA
Pelagia noctiluca genome assembly, chromosome: 7.
OZ004321.1:555207-555226
TTGCGGAGGGGCAACAGACTCCATTCTTCG555207AAAACAACGTATTCTTCTCAACCATACCACAAACATATCAGACGACCATC
RTWW2_17_G07.b1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_17_G07_A021 3', mRNA sequence.
CF474174.1:460-479
CATGAAAACATATTTCACTCCGTAATGCTG460TGAGAAGAATACGTTGTTTTCATTTTATTAAATGTGGAAGATTATTTTTT
Jasminum sambac cultivar Hutoumoli linkage group Lg4.
CP073647.1:5732853-5732872
ACACAAAAAAATTACAAACAACAAATTATG5732853TGAGAAGAATACGTTGTTTTACAAATCACATTACTTAAAATGTCATTGCT
Avena insularis genome assembly, chromosome: 3D.
OU342347.1:358555500-358555519
AAATACTAACAAGCAATACTTCTAGTACTT358555500TGAGAAGAATACGTTGTTTTTACACCACTAGTAGAAAGAATAATTTCCGA
Perizoma affinitatum genome assembly, chromosome: 7.
OY560191.1:152650-152669
CGCGCCACCGTGTCAGTTTGACCAGGCATC152650TGAGAAGAATACGTTGTTTTCAAAGCTCGCGTTGATGTACCGATCGCGCC
Perizoma affinitatum genome assembly, chromosome: 7.
OY560191.1:152724-152743
CGCGCCACCGCGTCAGTTTGACCAGGCATC152724TGAGAAGAATACGTTGTTTTCAAAGCTCGCGTTGATGTACCGATCGCGCC
Perizoma affinitatum genome assembly, chromosome: 7.
OY560191.1:152798-152817
CGCGCCACCGCGTCAGTTTGACCAGGCATC152798TGAGAAGAATACGTTGTTTTCAAAGCTCGCGTTGATGTACCGATCGCGCC
Plasmopara viticola lesion associated fusarivirus 1 isolate DMG-B-DN53634 RdRp and ORF2 genes, complete cds.
MN551102.1:5585-5604
CCAGAACATTGCTTCCAACCCTGTAGAGGA5585TGAGAAGAATACGTTGTTTTGGCTCAAGGCCATGTTAGATTCCACAAAAC
Erysiphe necator associated fusarivirus 1 isolate PMS-18_DN57271 RdRp, ORF-B, and ORF-C genes, complete cds.
MN558695.1:5584-5603
CCAGAACATTGCTTCCAACCCTGTAGAGGA5584TGAGAAGAATACGTTGTTTTGGCTCAAGGCCATGTTAGATTCCACAAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAACAACGTATTCTTCTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAACAACGTATTCTTCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=AAAACAACGTATTCTTCTCA&k=0&no_gap=0&offset=0&limit=50
0.160 | 0.062 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGAAGAATACGTTGTTTT&k=0&no_gap=0&offset=0&limit=47
0.166 | 0.006 | cgi_end;

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