GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:59:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Bos taurus genome assembly, chromosome: 7.
LR962890.1:51964287-51964306
TGACATCGCCAACAGCAGTATCCCTATTGG51964287AAAACAGAACACGACCCAGAGACAAGAGACATAGGTTTTGAAGTCTTAGT
Prunus dulcis DNA, unplaced-scaffold_1493.
AP021830.1:47108-47127
AAAAGCAAATAAATTCAGTCAATCAATCGA47108AAAACAGAACACGACCCAGATGAAAAAATACACATACAAATACACGCAGA
Bos mutus isolate yakQH1 chromosome 7.
CP027075.1:57606888-57606907
ACTAAGACTTCAAAACCTATGTCTCTTGTC57606888TCTGGGTCGTGTTCTGTTTTCCAATAGGGATACTGCTGTTGGCGATGTCA
Bos taurus genome assembly, chromosome: 7.
LR962765.1:57655344-57655363
ACTAAGACTTCAAAACCTATGTCTCTTGTC57655344TCTGGGTCGTGTTCTGTTTTCCAATAGGGATACTGCTGTTGGCGATGTCA
Bos gaurus x Bos taurus genome assembly, chromosome: 7.
OX258961.1:59860234-59860253
ACTAAGACTTCAAAACCTATGTCTCTTGTC59860234TCTGGGTCGTGTTCTGTTTTCCAATAGGGATACTGCTGTTGGCGATGTCA
Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 10.
CP133511.1:22524820-22524839
TTGTTTATCGACCTCGTCTTTTATTATCTC22524820TCTGGGTCGTGTTCTGTTTTTCTGTGCGATGTTTATTAGTACGTAGCGCA
Gadus macrocephalus isolate Gmac_GOA_2020 chromosome 10.
CP133534.1:22818345-22818364
TTGTTTATCGACCTCGTCTTTTATTATCTC22818345TCTGGGTCGTGTTCTGTTTTTCTGTGCGATGTTTATTAGTACGTAGCGCA
Pm_2749 Fruits and flowers of Prunus mume cv. Xiyeqing Prunus mume cDNA, mRNA sequence.
GW871323.1:379-398
TCTGCGTGTATTTGTATATGTATTTTNTCA379TCTGGGTCGTGTTCTGTTTTTCGATTTTTCGATTGATTGACTGAATTTAT
Prunus mume strain taoxingmei clone P25 SSR marker genomic sequence.
GU458026.1:233-252
TCACGAGACTCCTACCATGGATGCGCAGCA233TCTGGGTCGTGTTCTGTTTT
Prunus mume strain momei clone P26 SSR marker genomic sequence.
GU458027.1:233-252
TCACGAGACTCCTACCATGGATGTGCAGCA233TCTGGGTCGTGTTCTGTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAACAGAACACGACCCAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAACAGAACACGACCCAGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.348 | 0.339 | search_plus_done; http://172.18.8.135:50400/match?q=AAAACAGAACACGACCCAGA&k=0&no_gap=0&offset=0&limit=50
0.525 | 0.177 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGGGTCGTGTTCTGTTTT&k=0&no_gap=0&offset=0&limit=48
0.530 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).