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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:20:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GA__Ed0027A06r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0027A06r, mRNA sequence.
BQ410007.1:112-133
AGTGAAAATCAGATCAACCCTTCCATTAAA112AAAACTGAAGGGGATTCAAACAGTTAAATCATGTACCATAGTGTATTTGATT
GR__Eb11C11.r GR__Eb Gossypium raimondii cDNA clone GR__Eb11C11 3', mRNA sequence.
CO126876.1:92-113
TAGTAAAAATCAGATCAACCCTTACATAAA92AAAACTGAAGGGGATTCAAACAGTTAAATCATGTACCATAGTGTATTCGATT
GH_HYPT_01-01-04R_F04_InvR_13Apr04_022_R Stem - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW225140.1:91-112
TTAGTAAAAATCAGATCAACCCTTACATAA91AAAACTGAAGGGGATTCAAACAGTTAAATCATGTACCATAGTGTATTCGATT
GH_TBb042I17r Gossypium hirsutum TM-1 BAC library Gossypium hirsutum genomic, genomic survey sequence.
KO174506.1:256-277
TAGTAAAAATCAGATCAACCCTTACATAAA256AAAACTGAAGGGGATTCAAACAATTAAATCATATACCATAGTGTATTTGATT
Gossypioides kirkii chromosome KI_08.
CP032250.1:5989725-5989746
TAGTAAAAATCAGATCAACCCTTACATAAA5989725AAAACTGAAGGGGATTCAAACAGTTAAATCATGTACCATAGCGTATTTGATT
Gossypium raimondii isolate D5-4 chromosome D5_08.
CP032560.1:8579579-8579600
TTAGTAAAATCAGATCAACCCTTACATAAA8579579AAAACTGAAGGGGATTCAAACAGTTAAATCATGTACCATAGTGTATTCGATT
Gossypium herbaceum isolate Zhongcao1 chromosome 8.
CP106683.1:11960976-11960997
TAGTAAAAATCAGATCAACCCTTACATAAA11960976AAAACTGAAGGGGATTCAAACAGTTAAATCATGTACCATAGTGTATTTGATT
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:82853669-82853690
TTAGTAAAAATCGATCAACCCTTACATAAA82853669AAAACTGAAGGGGATTCAAACAGTTAAATCATATACCATAGTGTATTTGATT
Gossypium herbaceum isolate GPA1alz chromosome 12.
CP106705.1:70946166-70946187
TAGTAAAAATCAGATCAACCCTTACATAAA70946166AAAACTGAAGGGGATTCAAACAGTTAAATCATATACCATAGTGTATTTGATT
Gossypium bickii isolate GPG1lz chromosome 8.
CP106712.1:12894538-12894559
TAGTAAAAATCAGATCAACCCTTACATAAA12894538AAAACTGAAGGGGATTCAAACAGTTAAATCATGTACCATAGTGTATTTGATT
G01-071G1 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK798730.1:476-497
AATCGAATACACTATGGTACATGATTTAAC476TGTTTGAATCCCCTTCAGTTTTTTATGTAAGGGTTGATCTGATTTTTACTAA
G08-G08-003 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK799273.1:480-501
AATCGAATACACTATGGTACATGATTTAAC480TGTTTGAATCCCCTTCAGTTTTTTATGTAAGGGTTGATCTGATTTTTACTAA
F10-F10-002 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK799764.1:464-485
AATCGAATACACTATGGTACATGATTTAAC464TGTTTGAATCCCCTTCAGTTTTTTATGTAAGGGTTGATCTGATTTTTACTAA
Gossypium turneri isolate D10-2 chromosome D10_08.
CP032578.1:53577601-53577622
AATCGAATACACTATGGTACATGATTTAAC53577601TGTTTGAATCCCCTTCAGTTTTTTTATGTAAGGGTTGATCTGATTTTTACTA
Gossypium arboreum cultivar Shixiya1 chromosome 12.
CP053561.1:25281902-25281923
AATCAAATACACTATGATATATGATTTAAC25281902TGTTTGAATCCCCTTCAGTTTTTTATGTAAGGGTTGATTTGATTTTTACTAA
Gossypium herbaceum isolate Zhongcao1 chromosome 12.
CP106691.1:38964531-38964552
AATCAAATACACTATGGTATATGATTTAAC38964531TGTTTGAATCCCCTTCAGTTTTTTTATGTAAGGGTTGATCTGATTTTTACTA
Gossypium herbaceum isolate GPA1alz chromosome 8.
CP106698.1:117348798-117348819
AATCAAATACACTATGGTACATGATTTAAC117348798TGTTTGAATCCCCTTCAGTTTTTTTATGTAAGGGTTGATCTGATTTTTACTA
Gossypium rotundifolium isolate GPK201 chromosome 8.
CP106729.1:180359873-180359894
AATCAAATACACTATGGTACATGATTTAAC180359873TGTTTGAATCCCCTTCAGTTTTTTTATGTAAGGGTTGATCTGATTTTTACTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAACTGAAGGGGATTCAAACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAACTGAAGGGGATTCAAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.372 | 0.363 | search_plus_done; http://172.18.8.135:50400/match?q=AAAACTGAAGGGGATTCAAACA&k=0&no_gap=0&offset=0&limit=50
0.734 | 0.363 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTTGAATCCCCTTCAGTTTT&k=0&no_gap=0&offset=0&limit=40
0.740 | 0.005 | cgi_end;

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