GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 04:02:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Zebrafish DNA sequence from clone RP71-10G3 in linkage group 9.
AL590134.7:84518-84537
TATCACAATGATCTCATCATGACAGTCCTC84518AAAAGCTTGCTGGAGGTTGAAGTTATCAATAAATATAAAGCCAAATTCCA
Danio rerio strain T5D chromosome 9.
CP068743.1:34169062-34169081
TATCACAATGATCTCATCATGACAGTCCTC34169062AAAAGCTTGCTGGAGGTTGAAGTTATCAATAAATATAAAGCCAAATTCCA
Danio rerio strain Tubingen chromosome 9.
CP137046.2:35838020-35838039
TATCACAATGATCTCATCATGACAGTCCTC35838020AAAAGCTTGCTGGAGGTTGAAGTTATCAATAAATATAAAGCCAAATTCCA
Danio rerio genome assembly, chromosome: 9.
LR812046.1:34075319-34075338
TATTACAATGATCTCATCGTGACAGTCCTC34075319AAAAGCTTGCTGGAGGTTGAAGTTATCAATAAATATAAAGCCAAATTCCA
Danio rerio genome assembly, chromosome: 9.
LR812071.1:34218454-34218473
TATCACAATGATCTCATCATGACAGTCCTC34218454AAAAGCTTGCTGGAGGTTGAAGTTATCAATAAATATAAAGCCAAATTCCA
Danio rerio strain Cooch Behar (CB) genome assembly, chromosome: 9.
LR812552.1:33800399-33800418
TATCACAATGATCTCATCGTGACAGTCCTT33800399AAAAGCTTGCTGGAGGTTGAAGTTATCAATAAATATAAAGCCAAATTCCA
Danio rerio genome assembly, chromosome: 9.
LR812602.1:34284698-34284717
TATTACAATGATCTCATCGTGACAGTCCTC34284698AAAAGCTTGCTGGAGGTTGAAGTTATCAATAAATATAAAGCCAAATTCCA
Danio rerio genome assembly, chromosome: 9.
OX063298.1:34440078-34440097
TATTACAATGATCTCATCGTGACAGTCCTC34440078AAAAGCTTGCTGGAGGTTGAAGTTATCAATAAATATAAAGCCAAATTCCA
Argentina silus genome assembly, chromosome: Y.
OX637367.1:27910876-27910895
CCATAAGTGTCTGTGGTTGGGAGTCGGTTA27910876AAAAGCTTGCTGGAGGTTGAGTGACCACTTCACTTGTACTGGGAAGCATG
Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY- 171O23.
FP017224.3:90768-90787
TATCACAATGATCTCATCATGACAGTCCTC90768AAAAGCTTGCTGGAGGTTGAAGTTATCAATAAATATAAAGCCAAATTCCA
Vicia faba genome assembly, chromosome: 2.
OX451737.1:1497644212-1497644231
GAATCAGTATGAAAAACGTGCGTTTTTGAG1497644212AAAAGCTTGCTGGAGGTTGAAGAAGATAGGCTTGGGTTGGGCCTGAGTTC
TSA: Arachis duranensis Aduranensis_small_rep_c708 mRNA sequence.
JR343673.1:93-112
AAAAGACCMAAAAAAAAAGGATGACTATGA93TCAACCTCCAGCAAGCTTTTGCTATCCGGGGTGACACCTTAAGAAATAAG
Arachis hypogaea cultivar Shitouqi chromosome A08.
CP030990.1:11561301-11561320
AGACCAAAAAAAAAAAAAGGATGACTATGA11561301TCAACCTCCAGCAAGCTTTTGCTATCCGGGGTGACACCTTAAGAAATAAG
Arachis hypogaea cultivar Shitouqi chromosome B06.
CP030998.1:114862171-114862190
AAAAGGCTAAAAAAAAAGGCATGACTATGA114862171TCAACCTCCAGCAAGCTTTTGCTATCCAGGGTGACACCTAAAGAAATAAA
Arachis hypogaea cultivar Shitouqi chromosome B07.
CP030999.1:126847733-126847752
GACCAAAAAAAAGAAAAGGGATGACTATGA126847733TCAACCTCCAGCAAGCTTTTGCTATCCGGGGTGACACCTTAAGAAATAAG
Arachis ipaensis cultivar K30076 chromosome 06.
CP049897.1:113928526-113928545
AAAAGGCTAAAAAAAAAGGCATGACTATGA113928526TCAACCTCCAGCAAGCTTTTGCTATCCAGGGTGACACCTAAAGAAATAAA
Arachis ipaensis cultivar K30076 chromosome 07.
CP049898.1:127617149-127617168
GACCAAAAAAAAGAAAAGGGATGACTATGA127617149TCAACCTCCAGCAAGCTTTTGCTATCCGGGGTGACACCTTAAGAAATAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAAGCTTGCTGGAGGTTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAAGCTTGCTGGAGGTTGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.139 | 0.131 | search_plus_done; http://172.18.8.135:50400/match?q=AAAAGCTTGCTGGAGGTTGA&k=0&no_gap=0&offset=0&limit=50
0.191 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=TCAACCTCCAGCAAGCTTTT&k=0&no_gap=0&offset=0&limit=39
0.195 | 0.004 | cgi_end;

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