GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-19 02:49:58, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Cucumis melo genomic scaffold, anchoredscaffold00011.
LN681841.1:2383777-2383800
TTCGAAAAAAAAACTGAAAAAAAAGGAAAT2383777AAAATATGAAACCCATGGACATGACGTAGCCCTGTGTTTGTCAGGTTGACCATT
Cucumis melo isolate PI 511890 chromosome 4.
CP136104.1:34069645-34069668
AATGGTCAACCTGACAAACACAGGGCTACG34069645TCATGTCCATGGGTTTCATATTTTATTTCCTTTTTTTTCAGTTTTTTTTTTCGA
Citrullus lanatus cultivar Allsugar chromosome 10.
CP155018.1:32754327-32754350
AATGGTCAACCTGGCAAACACAGGGCTACG32754327TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar Charleston Gray chromosome 10.
CP155151.1:32680864-32680887
AATGGTCAACCTGGCAAACACAGGGCTACG32680864TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar Calhoun Gray chromosome 10.
CP155162.1:32571723-32571746
AATGGTCAACCTGGCAAACACAGGGCTACG32571723TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar PKR6 chromosome 10.
CP155173.1:32080673-32080696
AATGGTCAACCTGGCAAACACAGGGCTACG32080673TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar Sugarlee chromosome 10.
CP155184.1:32463620-32463643
AATGGTCAACCTGGCAAACACAGGGCTACG32463620TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar ShiHongNo2 chromosome 10.
CP155195.1:32470856-32470879
AATGGTCAACCTGGCAAACACAGGGCTACG32470856TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar PI 288522 chromosome 10.
CP155206.1:32425222-32425245
AATGGTCAACCTGGCAAACACAGGGCTACG32425222TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar DaBanHongZiGua chromosome 10.
CP155217.1:32535204-32535227
AATGGTCAACCTGGCAAACACAGGGCTACG32535204TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar PI 381740 chromosome 10.
CP155228.1:32313802-32313825
AATGGTCAACCTGGCAAACACAGGGCTACG32313802TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar SanBaiGua chromosome 10.
CP155239.1:32551757-32551780
AATGGTCAACCTGGCAAACACAGGGCTACG32551757TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar PI 254622 chromosome 10.
CP155250.1:32359119-32359142
AATGGTCAACCTGGCAAACACAGGGCTACG32359119TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus lanatus cultivar HeiShanRen chromosome 10.
CP155261.1:32754327-32754350
AATGGTCAACCTGGCAAACACAGGGCTACG32754327TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus amarus cultivar PI 296341-FR chromosome 10.
CP155272.1:31617485-31617508
TAATGGTCAACCTGGCAACACAGGGCTACG31617485TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTCAAAA
Citrullus amarus cultivar PI 189225 chromosome 10.
CP155283.1:31173998-31174021
TAATGGTCAACCTGGCAACACAGGGCTACG31173998TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTCAAAA
Citrullus amarus cultivar RCAT 055816 chromosome 10.
CP155294.1:31851060-31851083
TAATGGTCAACCTGGCAACACAGGGCTACG31851060TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTCAAAA
Citrullus amarus cultivar PI 271769 chromosome 10.
CP155305.1:31461937-31461960
TAATGGTCAACCTGGCAACACAGGGCTACG31461937TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTCAAAA
Citrullus lanatus subsp. mucosospermus cultivar PI 595203 chromosome 10.
CP155316.1:33083801-33083824
AATGGTCAACCTGGCAAACACAGGGCTACG33083801TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus amarus cultivar PI 482276 chromosome 10.
CP155327.1:32747088-32747111
TAATGGTCAACCTGGCAACACAGGGCTACG32747088TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTCAAAA
Citrullus lanatus subsp. mucosospermus cultivar PI 532732 chromosome 10.
CP155338.1:32671667-32671690
AATGGTCAACCTGGCAAACACAGGGCTACG32671667TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTTCAAA
Citrullus colocynthis cultivar PI 537300 chromosome 10.
CP155349.1:32656929-32656952
TAATGGTCAACCTGGCAACACAGGGCTACG32656929TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTCAAAA
Citrullus colocynthis cultivar PI 525081 chromosome 10.
CP155360.1:32507878-32507901
TAATGGTCAACCTGGCAACACAGGGCAACG32507878TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTCAAAAT
Citrullus naudinianus cultivar PI 596694M chromosome 10.
CP155371.1:30678356-30678379
TATTGGTCAACCTGGCGACACAGGGCTACG30678356TCATGTCCATGGGTTTCATATTTTATTGCCTTTTTTAAGATTTTTTTTTTTTCA
Citrullus colocynthis cultivar PI 652554 chromosome 10.
CP155382.1:31166157-31166180
TAATGGTCAACCTGGCAACACAGGGCTACG31166157TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTCAAAA
Citrullus colocynthis cultivar PI 632755 chromosome 10.
CP155393.1:32532888-32532911
TAATGGTCAACCTGGCAACACAGGGCAACG32532888TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTCAAAAT
Citrullus rehmii cultivar PI 670011 chromosome 10.
CP155404.1:34871804-34871827
TAATGGTCAACCTGGCAATACAGGGCTACG34871804TCATGTCCATGGGTTTCATATTTTATTGCCTTTTTTAAGATTTTTTTTTTTCAA
Citrullus ecirrhosus cultivar PI 673135 chromosome 10.
CP155415.1:34028284-34028307
TAATGGTCAACCTGGCAACACAGGGCTACG34028284TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTCAAAA
Cucumis melo genomic chromosome, chr_4.
LN713258.1:30739431-30739454
AATGGTCAACCTGACAAACACAGGGCTACG30739431TCATGTCCATGGGTTTCATATTTTATTTCCTTTTTTTTCAGTTTTTTTTTCGAA
Citrullus colocynthis genome assembly, chromosome: 5.
OZ021739.1:31328876-31328899
TAATGGTCAACCTGGCAACACAGGGCTACG31328876TCATGTCCATGGGTTTCATATTTTATTGTCTTTTTTAAGATTTTTTTTTCAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAATATGAAACCCATGGACATGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAATATGAAACCCATGGACATGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.259 | 0.250 | search_plus_done; http://172.18.8.135:50800/match?q=AAAATATGAAACCCATGGACATGA&k=0&no_gap=0&offset=0&limit=50
0.368 | 0.109 | search_minus_done; http://172.18.8.135:50800/match?q=TCATGTCCATGGGTTTCATATTTT&k=0&no_gap=0&offset=0&limit=49
0.387 | 0.019 | cgi_end;

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