GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 15:04:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:546625-546646
TTTGTTTCCAAATACTGGAACTACGCTTCA546625AAAATCTTAGCCCAAAATCTCCACTTTATTTGCTTGTCTTCCCTTCGTCTTC
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:435982-436003
TTTGTTTTCAAATACTGGAACTGCGCTTCA435982AAAATCTTAGCCCAAAATCTCCATTTTATGCTCGTCTTCCTTTGTCTTCCAT
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:439019-439040
TTTGTTTCCAAACACTGGAACTGCGCTTCA439019AAAATCTTAGCCCAAAATCTCCATTTTATTTGCTTGTCTTCCCATTATCCTC
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:417190-417211
TTTGTTTCCAAATACTGGAACTGCGCTTCA417190AAAATCTTAGCCCAAAATCTCCATTTTATTTGCTTGTCTTCCTTACTCTTGT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:41284897-41284918
GAAGACGAAGGGAAGACAAGCAAATAAAGT41284897GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACAAA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:40780465-40780486
GAAGACGAAGGGAAGACAAGCAAATAAAGT40780465GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACAAA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:40782509-40782530
ACGGAAGACAAAGGAAGACGAGCATAAAAT40782509GGAGATTTTGGGCTAAGATTTTTGAAGCGCAGTTCCAGTATTTGAAACCAAA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:41104392-41104413
GAAGACGAAGGGAAGACAAGCAAATAAAGT41104392GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACAAA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:41106428-41106449
ACGGAAGACAAAGGAAGACGAGCATAAAAT41106428GGAGATTTTGGGCTAAGATTTTTGAAGCGCAGTTCCAGTATTTGAAACCAAA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:42408354-42408375
GAAGACGAAGGGAAGACAAGCAAATAAAGT42408354GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGCATTTGGAAACAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:41096949-41096970
GAAGACAAAGGGAAGACAAGCAAATAAAAT41096949GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:41099187-41099208
ACGGATGACAAAGGAAGACGAGCATAAAAT41099187GGAGATTTTGGGCTAAGATTTTTGAAGCGCAGTTCCAGTATTTGAAACCAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:38907069-38907090
GAAGACAAAGGGAAGACAAGCAAATAAAAT38907069GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:38909177-38909198
ACGGAAGACAAAGGAAGACGAGCATAAAAT38909177GGAGATTTTGGGCTAAGATTTTTGAAGCGCAGTTCCAGTATTTGAAACCAAA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:40772171-40772192
GAAGACAAAGGGAAGACAAGCAAATAAAAT40772171GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACAAA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:40774425-40774446
ACGGATGACAAAGGAAGACGAGCATAAAAT40774425GGAGATTTTGGGCTAAGATTTTTGAAGCGCAGTTCCAGTATTTGAAACCAAA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:41311143-41311164
GAAGACGAAGGGAAGACAAGCAAATAAAGT41311143GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACAAA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:41313187-41313208
ACGGAAGACAAAGGAAGACGAGCATAAAAT41313187GGAGATTTTGGGCTAAGATTTTTGAAGCGCAGTTCCAGTATTTGAAACCAAA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:41105328-41105349
GAAGACAAAGGGAAGACAAGCAAATAAAAT41105328GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACAAA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:41107562-41107583
ACGGATGACAAAGGAAGACGAGCATAAAAT41107562GGAGATTTTGGGCTAAGATTTTTGAAGCGCAGTTCCAGTATTTGAAACCAAA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:40520384-40520405
GAAGACGAAGGGAAGACAAGCAAATAAAGT40520384GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACAAA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:40522428-40522449
ACGGAAGACAAAGGAAGACGAGCATAAAAT40522428GGAGATTTTGGGCTAAGATTTTTGAAGCGCAGTTCCAGTATTTGAAACCAAA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:41815612-41815633
GAAGACGAAGGGAAGACAAGCAAATAAAGT41815612GGAGATTTTGGGCTAAGATTTTTGAAGCGTAGTTCCAGTATTTGGAAACGAA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:41817715-41817736
ACGGAAGACAAAGGAAGACGAGCATAAAAT41817715GGAGATTTTGGGCTAAGATTTTTGAAGCGCAGTTCCAGTATTTGAAACCAAA
Lactuca saligna genome assembly, chromosome: 9.
OX465085.1:114583057-114583078
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA114583057GGAGATTTTGGGCTAAGATTTTACTAGAAAAGAGATGTGTTGAAAATCACAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAATCTTAGCCCAAAATCTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAATCTTAGCCCAAAATCTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.106 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=AAAATCTTAGCCCAAAATCTCC&k=0&no_gap=0&offset=0&limit=50
0.141 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGATTTTGGGCTAAGATTTT&k=0&no_gap=0&offset=0&limit=46
0.154 | 0.013 | cgi_end;

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