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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 21:08:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Scyliorhinus canicula genome assembly, chromosome: 5.
LR744034.1:150348686-150348705
TATATTTTAGTTCTTGAATATTGCTGAAAG150348686AAACAGACATGCTATTGAAGCTTTTCATTTGCACTCATCAGGATAGCTCA
Scyliorhinus canicula genome assembly, chromosome: 11.
LR744040.1:20343977-20343996
GTGCGTCAATAGTCCTGAGTGTTGCTGAGA20343977AAACAGACATGCTATTGAAGCTTTTCATTTTGCACTCATCAGGCCAAAAC
Psittacula echo genome assembly, chromosome: Z.
OY725424.1:62129981-62130000
AGACTTTGATTATCTTCACAACTCAGTGAA62129981AAACAGACATGCTATTGAAGGATAATGACAAGCCAGCACTTTTCTCTTAA
GQ0204.B3_J06 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0204_J06 5', mRNA sequence.
DV984842.2:138-157
AGAATGTCGGGTCTCCACTGCCACGACCTG138AAACAGACATGCTATTGAAGATGAAAATAGCTCAACTCCAACAGCAGCAG
GQ02817.B7_G15 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02817_G15 5', mRNA sequence.
EX321155.1:206-225
AGAATGTCGGGTCTCCACTGCCACGACCTG206AAACAGACATGCTATTGAAGATGAAAATAGCTCAACTCCAACAGCAGCAG
GQ03239.B7_J19 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03239_J19 5', mRNA sequence.
EX379601.1:13-32
TGCCACGACCTG13AAACAGACATGCTATTGAAGATGAAAATAGCTCAACTCCAACAGCAGCAG
GQ03505.B7_L12 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03505_L12 5', mRNA sequence.
EX402702.1:46-65
AGAATGTCGGGTCTCCACTGCCACGACCTG46AAACAGACATGCTATTGAAGATGAAAATAGCTCAACTCCAACAGCAGCAG
GQ03813.B7_H02 GQ038 - Stem - Active growth Picea glauca cDNA clone GQ03813_H02 5', mRNA sequence.
EX426477.1:614-633
AGAATGTCGGGTCTCCACTGCCACGACCTG614AAACAGACATGCTATTGAAGATGAAAATAGCTCAACTCCAACAGCAGCAG
WS0461.C21_D06 SS-BD-31 Picea sitchensis cDNA clone WS0461_D06 5', mRNA sequence.
GH285206.1:270-289
AGAATGTCGGGTCTCCACTGCCACGACCTG270AAACAGACATGCTATTGAAGATGAAAATAGCTCAACTCCAACAGCAGCAG
WS0461.CR_D06 SS-BD-31 Picea sitchensis cDNA clone WS0461_D06 3', mRNA sequence.
GH285580.1:270-289
AGAATGTCGGGTCTCCACTGCCACGACCTG270AAACAGACATGCTATTGAAGATGAAAATAGCTCAACTCCAACAGCAGCAG
Picea glauca clone GQ03505_L12 mRNA sequence.
BT113974.1:46-65
AGAATGTCGGGTCTCCACTGCCACGACCTG46AAACAGACATGCTATTGAAGATGAAAATAGCTCAACTCCAACAGCAGCAG
Picea sitchensis clone WS0461_D06 unknown mRNA.
BT122794.1:270-289
AGAATGTCGGGTCTCCACTGCCACGACCTG270AAACAGACATGCTATTGAAGATGAAAATAGCTCAACTCCAACAGCAGCAG
Pinctada fucata DNA, chromosome 2, nearly complete sequence, Principal Pseudohaplotype.
AP027103.1:43799993-43800012
ATTCAGAGAGATTCGTTTTTATATATTGTA43799993AAACAGACATGCTATTGAAGAATAAAGATTACGAGTCCGCCGAAGTCGGA
Ophonus ardosiacus genome assembly, chromosome: 2.
OW964824.1:1043259-1043278
TAACAGAGTTGGCATTAATGCTCCGGGAAC1043259AAACAGACATGCTATTGAAGCAAACCCAGTTTGGAATGAAGATCTAAATG
Orthosia gracilis genome assembly, chromosome: 2.
OX387265.1:50411171-50411190
GATGTTATATTCTGAAATGGTATAAACAAT50411171AAACAGACATGCTATTGAAGCAATCCCGAGAGATTTTCTGTCATTTATGA
Orthosia gothica genome assembly, chromosome: 18.
OX459052.1:5269171-5269190
AATGTTATGTTATGAAATGGTGTAAACAAT5269171AAACAGACATGCTATTGAAGCTATCCCGAGTGATTTGCCGTCATTTATTG
Orthosia gothica genome assembly, chromosome: 28.
OX459062.1:12763624-12763643
GATGTTATGCTATGAAATGGTATAAACAAT12763624AAACAGACATGCTATTGAAGCAATCCCGAATGAATACAAAGATAAATACG
Orthosia gothica genome assembly, chromosome: 34.
OX459068.1:435863-435882
GATGTTATGTTATAAAATGGTATAAACAAT435863AAACAGACATGCTATTGAAGCAATCCCGAATGATTTGCCGTTATTTATTG
Poecilus cupreus genome assembly, chromosome: 4.
OZ012717.1:20561559-20561578
AAACAGAATTGGAACAAGTGCACCTGGTAC20561559AAACAGACATGCTATTGAAGCAAATCCGGTTTGGAATGAAGACTTAAATG
Pinctada fucata DNA, chromosome 8, nearly complete sequence, Principal Pseudohaplotype.
AP027109.1:9272797-9272816
TCCGACTTCGGCGGACTCGTAATCTTTATT9272797CTTCAATAGCATGTCTGTTTTACAATATATAAAAACGAATCTCTCTGAAT
Pinctada fucata DNA, chromosome 5, nearly complete sequence, Alternate Pseudohaplotype.
AP027120.1:42280187-42280206
TCCGACTTCGGCGGACTCGTAATCTTTATT42280187CTTCAATAGCATGTCTGTTTTACAATATATAAAAACGAATCTCTCTGAAT
Pinctada fucata DNA, chromosome 12, nearly complete sequence, Alternate Pseudohaplotype.
AP027127.1:6260811-6260830
TCCGACTTCGGCGGACTCGTAATCTTTATT6260811CTTCAATAGCATGTCTGTTTTACAATATATAAAAACGAATCTCTCTGAAT
Omphaloscelis lunosa genome assembly, chromosome: 29.
OU744272.1:649213-649232
CGCGCGGGATTTGCCCCAGTTTGACCAGAG649213CTTCAATAGCATGTCTGTTTTGATTCGTTGACAAAAATAACAACCATGAG
Orthosia gracilis genome assembly, chromosome: 1.
OX387264.1:18482968-18482987
AAATAAATGACTGCAGATCTCTCGGGATTG18482968CTTCAATAGCATGTCTGTTTATTGCTTATACCATTTCATAACATAACATC
Orthosia gothica genome assembly, chromosome: 4.
OX459037.1:13067220-13067239
AAATAAATGACTGCAAATCACTCGGGAAAG13067220CTTCAATAGCATGTCTGTTTATTGTATTTACCATTACATAACATAACATC
Orthosia gothica genome assembly, chromosome: 5.
OX459038.1:35880909-35880928
CAATAAATAACGGCAAATCATTCGGGATTG35880909CTTCAATAGCATGTCTGTTTATTGTTTATACCATTTCATAACATAACATC
Orthosia gothica genome assembly, chromosome: 13.
OX459047.1:1236157-1236176
CAATAAATAACGGCAAATCATTCGGGATGG1236157CTTCAATAGCATGTCTGTTTATCTATTCTAATCTTTATTTTTTTCTTAAT
Orthosia gothica genome assembly, chromosome: 28.
OX459062.1:12799156-12799175
CAATAAATAACGGCAAATCATTCGGGATTG12799156CTTCAATAGCATGTCTGTTTATTGTTTATACCATAACATAACATCACGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAACAGACATGCTATTGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACAGACATGCTATTGAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.967 | 0.958 | search_plus_done; http://172.18.8.135:50400/match?q=AAACAGACATGCTATTGAAG&k=0&no_gap=0&offset=0&limit=50
1.095 | 0.129 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCAATAGCATGTCTGTTT&k=0&no_gap=0&offset=0&limit=31
1.101 | 0.006 | cgi_end;

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