GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:47:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sus scrofa scrofa breed NS chromosome 6.
CP071557.1:66477116-66477135
CTGGAAGGACAGAGCCAGCACATCAGCCCC66477116AAACCCACCACCTTCTCTCCCAAGTGGCGTGGGCGCTTGTGTGCCTGAGA
Orcinus orca genome assembly, chromosome: 9.
OW443369.1:25357771-25357790
TTTGGAGCAACTTAAACTTAGTATTTTTCT25357771AAACCCACCACCTTCTCTCCTCAGCCTAATCTACCGCTGCTCCCCCGTTC
Lagenorhynchus albirostris genome assembly, chromosome: 8.
OX459080.1:25274682-25274701
TTTGGAGCAACTTAAACTTAGTATTTTTCT25274682AAACCCACCACCTTCTCTCCTCAGCCTAATCTACTGCTGCTCCCCTGTTC
Globicephala melas genome assembly, chromosome: 9.
OY734048.1:25250499-25250518
TTTGGAGCAACTTAAACTTAGTATTTTTCT25250499AAACCCACCACCTTCTCTCCTCAGCCTAATCTACTGCTGCTCCCCTGTTC
Sus scrofa genome assembly, chromosome: 6.
OY997213.1:69054939-69054958
CTGGAAGGACAGAGCCAGCACATCAGCCCC69054939AAACCCACCACCTTCTCTCCCAAGTGGCGTGGGCGCTTGTGTGCCTGAGA
Lipophrys pholis genome assembly, chromosome: 19.
OY726551.1:22412841-22412860
CAAGAAGAACATGCAAACAGAAGTGGACTC22412841AAACCCACCACCTTCTCTCCACCCAAGCTGAACTCAACCACTCAGTGGAA
Lipophrys pholis genome assembly, chromosome: 19.
OY726551.1:22425693-22425712
CAAGAAGAATATGCAAACAGAAGTGGACTC22425693AAACCCACCACCTTCTCTCCACCCAAGCTGAACTCAACCACTCAGTGGAA
Dianthus caryophyllus mRNA, clone: CES11_K21, 5' end sequence.
FY386517.1:17-36
GACACTCCTCCTCTCG17AAACCCACCACCTTCTCTCCACCGCACCACTCTCTCTCCTCCCTCAAAAC
Dianthus caryophyllus mRNA, clone: CES31K01, 5' end sequence.
FY394025.1:31-50
GCAACAATGGAAACCACACTCCTCCTCTCG31AAACCCACCACCTTCTCTCCACCGCACCACTCTCTCTCCTCCCTCAAAAC
TSA: Phalaenopsis aphrodite PATC132380 mRNA sequence.
JI639723.1:1320-1339
ATCTCCTCCCGGTCCGAACCAACATAGTCC1320AAACCCACCACCTTCTCTCCAAACCGGACATGCTTTATAAGATCAAACCG
Epichloe amarillans strain NFE708 chromosome 6.
CP099638.1:1527730-1527749
CCGATGATTAGGATAACTCGTGGGGTCGGC1527730AAACCCACCACCTTCTCTCCCGAGTCCTATGTCCTATCCAACAAGGAGAC
Theobroma grandiflorum isolate C1074 chromosome 7.
CP142133.1:6442457-6442476
GATGGTAATTATCTAACTCACTGGGTTGTA6442457AAACCCACCACCTTCTCTCCCCCTTTCAGGCTCGAGATCACTGGTAAGCA
Theobroma grandiflorum isolate C1074 chromosome 7.
CP142133.1:27835798-27835817
GATGGTGGTTATCTAACTCACTGGGTTGTA27835798AAACCCACCACCTTCTCTCCCCCTTTCAAGCTCGAGATCACTGGTAAGCA
Limnephilus marmoratus genome assembly, chromosome: 3.
OU862908.1:69549568-69549587
ACTATTATTTTTTTTATTTACTGCTGCTAA69549568AAACCCACCACCTTCTCTCCTAGATTCGCGATCTCTTTGAAAAACTATGT
Delphinus delphis genome assembly, chromosome: 9.
OX465335.1:81932417-81932436
GAACAGGGGAGCAGCAGTAGATTAGGCTGA81932417GGAGAGAAGGTGGTGGGTTTAGAAAAATACTAAGTTTAAGTTGCTCCAAA
Stenella coeruleoalba genome assembly, chromosome: 9.
OX596394.1:79914350-79914369
GAACAGGGGAGCAGCAGTAGATTAGGCTGA79914350GGAGAGAAGGTGGTGGGTTTAGAAAAATACTAAGTTTAAGTTGCTCCAAA
Phocoena phocoena genome assembly, chromosome: 9.
OZ004766.1:80668667-80668686
GAACAGGGGAGCAGCAGTAGATTAGGCTGA80668667GGAGAGAAGGTGGTGGGTTTAGAAAAATACTAAGTTTAAGTTGTTCCAAA
Notothenia rossii genome assembly, chromosome: 7.
OX449117.1:18109483-18109502
TGGGAAGGTGTATAAAATGATAGAAGAGAG18109483GGAGAGAAGGTGGTGGGTTTATTGTGATTAGATACTGTTTATTGGCATTG
Podarcis cretensis genome assembly, chromosome: 8.
OX638156.1:84253209-84253228
TGGTCCATGGCTTTCCTCTTTGATAAAGTT84253209GGAGAGAAGGTGGTGGGTTTGGTGGGGCGTAGGGGGTGTTGGGCAGAATT
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone PigE-149G7.
FP565391.1:150424-150443
TCTCAGGCACACAAGCGCCCACGCCACTTG150424GGAGAGAAGGTGGTGGGTTTGGGGCTGATGTGCTGGCTCTGTCCTTCCAG
Lineus longissimus genome assembly, chromosome: 18.
OU343009.1:15593398-15593417
GAGGTGGAGAGGGCGAGGTGCATGATGCAT15593398GGAGAGAAGGTGGTGGGTTTATCACACATCATGCGATGCGTGCAGATTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAACCCACCACCTTCTCTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACCCACCACCTTCTCTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.352 | 0.344 | search_plus_done; http://172.18.8.135:50400/match?q=AAACCCACCACCTTCTCTCC&k=0&no_gap=0&offset=0&limit=50
0.470 | 0.118 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGAGAAGGTGGTGGGTTT&k=0&no_gap=0&offset=0&limit=36
0.475 | 0.004 | cgi_end;

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