GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-26 18:31:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gobius niger genome assembly, chromosome: 2.
OX637596.1:46916480-46916499
CAGTCTCCCCCAGGGGGAAACTGAAGCTAC46916480AAACGTAGCTACCACCACCGAGTATGGAGTGAATGTACAACTGTCTCATG
MAG: Nocardioidaceae bacterium isolate SSC3 chromosome.
CP059259.1:2581248-2581267
CGCACCGGTGCTCGCCGGGGACCTGGAAGT2581248AAACGTAGCTACCACCACCGTCCAAGCGAACGTCTTGGCAGCCTGCCTCG
Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
AP015035.1:42319094-42319113
GAAGAAGCTACCGGCGGTGGCTGCCACCAC42319094AAACGTAGCTACCACCACCGCAAGAAACCCAATATTTTTCATCTCAACGA
Gobius niger genome assembly, chromosome: 4.
OX637598.1:33649120-33649139
CATGAGACAATTGTACATTCACTCCATACT33649120CGGTGGTGGTAGCTACGTTTGTAGCTTCAGAGACTGACAGAAGCGCTGTC
Vigna angularis mRNA, clone: VES03L03.
HX943476.1:84-103
TCGTTGAGATGAAAAATATTGGGTTTCTTG84CGGTGGTGGTAGCTACGTTTGTGGTGGCAGCCACCGCCGGTAGCTTCTTC
Vigna angularis mRNA, clone: VES16A04.
HX948124.1:84-103
TCGTTGAGATGAAAAATATTGGGTTTCTTG84CGGTGGTGGTAGCTACGTTTGTGGTGGCAGCCACCGCCGGTAGCTTCTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAACGTAGCTACCACCACCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACGTAGCTACCACCACCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.101 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=AAACGTAGCTACCACCACCG&k=0&no_gap=0&offset=0&limit=50
0.361 | 0.260 | search_minus_done; http://172.18.8.135:50400/match?q=CGGTGGTGGTAGCTACGTTT&k=0&no_gap=0&offset=0&limit=47
0.364 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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