GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:28:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB099D02F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB099D02, genomic survey sequence.
ED514725.1:640-659
CGTATCGAATCAATCGTAAAATGAAAACTA640AAACTAAACCGAGTCAATGGTTAATTAAAGTTTTCTCATACCAATTAATG
KBrB100D02F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB100D02, genomic survey sequence.
ED515460.1:638-657
CGTACCGAATCAATCGTAAAATGAAAACTA638AAACTAAACCGAGTCAATGGTTAATTAAAGTTTTCTCATACCAATTAATG
Brassica rapa subsp. pekinensis clone KBrH043I21, complete sequence.
FP340640.1:116442-116461
CGTACCGAATCAATCGTAAAATGAAAACTA116442AAACTAAACCGAGTCAATGGTTAATTAAAGTTTTCTCATACCAATTAATG
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:27381758-27381777
CGTACCGAATCAATCGTAAAATGAAAACTA27381758AAACTAAACCGAGTCAATGGTTGATTAAAGTTTTCTCATACCAAGGAAAT
Brassica napus genome assembly, chromosome: A08.
HG994362.1:2850813-2850832
ATTTCCTTGGTATGAGAAAACTTTAATCAA2850813CCATTGACTCGGTTTAGTTTTAGTTTTCATTTTACGATTGATTCGGTACG
Brassica rapa genome, scaffold: A08.
LR031575.1:2879407-2879426
ATTTCCTTGGTATGAGAAAACTTTAATCAA2879407CCATTGACTCGGTTTAGTTTTAGTTTTCATTTTACGATTGATTCGGTACG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:3835207-3835226
CATTAATTGGTATGAGAAAACTTTAATTAA3835207CCATTGACTCGGTTTAGTTTTAGTTTTCATTTTACGATTGATTCGGTACG
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:2894991-2895010
ATTTCCTTGGTATGAGAAAACTTTAATCAA2894991CCATTGACTCGGTTTAGTTTTAGTTTTCATTTTACGATTGATTCGGTACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAACTAAACCGAGTCAATGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACTAAACCGAGTCAATGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.166 | 0.157 | search_plus_done; http://172.18.8.135:50400/match?q=AAACTAAACCGAGTCAATGG&k=0&no_gap=0&offset=0&limit=50
0.197 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=CCATTGACTCGGTTTAGTTT&k=0&no_gap=0&offset=0&limit=46
0.199 | 0.003 | cgi_end;

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