GGGenome | Results

2025-04-05 20:35:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

020805AVBC013082HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC013082, mRNA sequence.
CN948355.1:175-197

TCTGAACCATAGCCTACTTAATCATCAAAC175AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Mdlv2_4023e18.y1 Mdlv2 Malus domestica cDNA clone Mdlv2_4023e18 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CV655921.1:155-177

CTATGAACCATAACTACTTAATCATCAAAC155AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Mdlv4-4047o20.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4047o20 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CX023426.1:179-201

CTATGAACCATAACTACTTAATCATCAAAC179AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Mdlv4-4047l19.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4047l19 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CX023492.1:167-189

TCTGAACCATAGCCTACTTAATCATCAAAC167AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Mdfb8003O17.g1 Apple_EST_Mdfb Malus domestica cDNA similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-C gb|
DT001515.1:181-203

TCTGAACCATAGCCTACTTAATCATCAAAC181AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Mdfrt3107O07_e12407.g1 Mdfrt Malus domestica cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-C g
GO549644.1:205-227

CTATGAACCATAACTACTTAATCATCAAAC205AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Mdrtp1002E21_e37387.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S aci
GO562335.1:204-226

CTATGAACCATAACTACTTAATCATCAAAC204AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Mdfrb3144D17_e4860.b1 Apple_EST_Mdfrb Malus domestica cDNA 3' similar to gb|AAF34767.1|AF227622_1 60S acidic ribosomal protein PO [Euphorbia esula], mRNA sequence.
GO567337.1:221-243

TCTGAACCATAGCCTACTTAATCATCAAAC221AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Pyrus pyrifolia mRNA, clone: NFR1_10_09, 3' end sequence, expressed in fruit.
HX739228.1:497-519

CTATGAACCATAGTTACTTAATCATCAAAC497AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCGGGCTTCTTCTC

Pyrus pyrifolia mRNA, clone: NFR4_04_88, 5' end sequence, expressed in fruit.
HX754086.1:107-129

CTATGAACCATAGTTACTTAATCATCAAAC107AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCGGGCTTCTTCTC

TSA: Pyrus x bretschneideri Unigene41076_XinShao mRNA sequence.
JR632726.1:189-211

CTATGAACCATAGTTACTTAATCATCAAAC189AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCGGGCTTCTTCTC

Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:37574292-37574314

CTCTGAACCATAGCTACTTAATCATCAAAC37574292AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:27009057-27009079

CTCTGAACCATAGCTACTTAATCATCAAAC27009057AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:25224700-25224722

CTCTGAACCATAGCTACTTAATCATCAAAC25224700AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:26835951-26835973

TCTGAACCATAGCCTACTTAATCATCAAAC26835951AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:28845404-28845426

CTATGAACCATAACTACTTAATCATCAAAC28845404AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:26599917-26599939

TCTGAACCATAGCCTACTTAATCATCAAAC26599917AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:28504091-28504113

CTATGAACCATAACTACTTAATCATCAAAC28504091AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:25280210-25280232

CTCTGAACCATAGCTACTTAATCATCAAAC25280210AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:23260230-23260252

TCTGAACCATAGCCTACTTAATCATCAAAC23260230AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTTTC

Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:28891540-28891562

CTATGAACCATAACTACTTAATCATCAAAC28891540AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Malus domestica genome assembly, chromosome: 1.
OU696677.1:23256596-23256618

TCTGAACCATAGCCTACTTAATCATCAAAC23256596AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus domestica genome assembly, chromosome: 7.
OU696683.1:28166718-28166740

CTATGAACCATAACTACTTAATCATCAAAC28166718AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Malus domestica genome assembly, chromosome: 1.
OU744542.1:27072613-27072635

CTCTGAACCATAGCTACTTAATCATCAAAC27072613AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus domestica genome assembly, chromosome: 7.
OU744548.1:29404406-29404428

CTATGAACCATAACTACTTAATCATCAAAC29404406AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Malus domestica genome assembly, chromosome: 1.
OU744953.1:26354796-26354818

TCTGAACCATAGCCTACTTAATCATCAAAC26354796AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus domestica genome assembly, chromosome: 7.
OU744959.1:28267058-28267080

CTATGAACCATAACTACTTAATCATCAAAC28267058AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Malus domestica genome assembly, chromosome: 1.
OU744991.1:23526845-23526867

TCTGAACCATAGCCTACTTAATCATCAAAC23526845AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCCGGCTCAGGCTTCTTCTC

Malus domestica genome assembly, chromosome: 7.
OU744997.1:28581268-28581290

CTATGAACCATAACTACTTAATCATCAAAC28581268AAACTGAAACCCATTTCCTCGTCGGATTCCTCTTCGGGCTCGGGCTTCTTCTC

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH067_03009m, 5' end sequence.
AB450737.1:380-402

GAGAAGAAGCCCGAGCCGGAAGAGGAATCC380GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAACTATGGTTCATAG

000917AALA004339HT (AALA) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALA004339, mRNA sequence.
CN863254.1:216-238

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC216GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

000817AALB001178HT (AALB) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALB001178, mRNA sequence.
CN865573.1:258-280

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC258GACGAGGAAATGGGTTTCAGTTTGTTTGAT

020902AARA011721HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA011721, mRNA sequence.
CN877648.1:124-146

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC124GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

010812AASB001544HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB001544, mRNA sequence.
CN882355.1:28-50

AAGAAGCCCGAGCCCGAAGAGGAATCC28GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

010811AASB002082HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB002082, mRNA sequence.
CN884556.1:28-50

AAGAAGCCCGAGCCCGAAGAGGAATCC28GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

010812AASB002271HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB002271, mRNA sequence.
CN884665.1:28-50

AAGAAGCCCGAGCCCGAAGAGGAATCC28GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

010513AAXA001127HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA001127, mRNA sequence.
CN890579.1:396-418

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC396GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

010513AAXA001162HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA001162, mRNA sequence.
CN890602.1:396-418

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC396GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

010530AAXA004250HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA004250, mRNA sequence.
CN891303.1:396-418

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC396GACGAGGAAATGGGTTTCAGTTTGTTTGATGATT

000605AENA002295HT (AENA) Northern Spy expanding leaf Malus domestica cDNA clone AENA002295, mRNA sequence.
CN925874.1:284-306

GAGAAGAAGCCTGAGCCGGAAGAGGAATCC284GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGCTATGGTTCAGAG

000605AENA002371HT (AENA) Northern Spy expanding leaf Malus domestica cDNA clone AENA002371, mRNA sequence.
CN925927.1:284-306

GAGAAGAAGCCTGAGCCGGAAGAGGAATCC284GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGCTATGGTTCAGAG

010615AVBC002877HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC002877, mRNA sequence.
CN938375.1:377-399

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC377GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTACTTATGGTTCATAG

010616AVBC004353HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004353, mRNA sequence.
CN938935.1:457-479

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC457GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

010616AVBC004355HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004355, mRNA sequence.
CN938936.1:457-479

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC457GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

010616AVBC004814HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004814, mRNA sequence.
CN939133.1:286-308

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC286GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

020805AVBC012060HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012060, mRNA sequence.
CN947914.1:376-398

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC376GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTAT

020731AVBC008558HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC008558, mRNA sequence.
CN949190.1:285-307

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC285GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

Mdfr3003k20.y1 Mdfr Malus domestica cDNA clone Mdfr3003k20 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CN995855.2:263-285

GAGAAGAAGCCTGAGCCGGAAGAGGAATCC263GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGGCTATGGTTCAGA

Mdfrt3036h24.y1 Mdfrt Malus domestica cDNA clone Mdfrt3036h24 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CO419175.1:340-362

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC340GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

Mdfrt3043g09.y1 Mdfrt Malus domestica cDNA clone Mdfrt3043g09 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CO576117.1:316-338

GAGAAGAAGCCTGAGCCGGAAGAGGAATCC316GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGGCTATGGTTCAGA

TSA: Pyrus pyrifolia mRNA, contig: contig_5295.
FX394975.1:1006-1028

GAGAAGAAGCCCGAGCCGGAAGAGGAATCC1006GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAACTATGGTTCATAG

TSA: Pyrus pyrifolia mRNA, contig: contig_8704revcomp.
FX411922.1:264-286

GAGAAGAAGCCCGAGCCGGAAGAGGAATCC264GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAACTATGGTTCATAG

TSA: Pyrus communis mRNA, contig: lc685.
FX609272.1:549-571

GAGAAGAAGCCCGAGCCGGAAGAGGAATCC549GACGAGGAAATGGGTTTCAGTTTGTTGATGATTAAGTAACTATGGTTCATAGT

TSA: Pyrus communis mRNA, contig: lc26869.
FX635194.1:365-387

GAGAAGAAGCCCGAGCCGGAAGAGGAATCC365GACGAGGAAATGGGTTTCAGTTTGTTGATGATTAAGTAACTATGGTTCATAGT

TSA: Pyrus communis mRNA, contig: lc29520.
FX637734.1:184-206

GAGAAGAAGCCCGAGCCGGAAGAGGAATTC184GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAACTATGGTTCATAG

TSA: Pyrus communis mRNA, contig: lc44969.
FX651709.1:362-384

GAGAAGAAGCCCGAGCCGGAAGAGGAATCC362GACGAGGAAATGGGTTTCAGTTTGNATGATTAAGTAACTATGGTTCATAGTTG

Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:7409699-7409721

GAGAAGAAGCCCGAGCCCGAAGAGGAATCC7409699GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGTTATGGTTCATAG

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:6986053-6986075

GAGAAGAAGCCTGAGCCGGAAGAGGAATCC6986053GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAGGCTATGGTTCAGA

Pyrus communis genome assembly, chromosome: 16.
OY757083.1:5485194-5485216

GAGAAGAAGCCCGAGCCGGAAGAGGAATCC5485194GACGAGGAAATGGGTTTCAGTTTGTTTGATGATTAAGTAACTATGGTTCATAG

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.673 | 0.664 | search_plus_done; http://172.18.8.135:50400/match?q=AAACTGAAACCCATTTCCTCGTC&k=0&no_gap=0&offset=0&limit=50
1.280 | 0.608 | search_minus_done; http://172.18.8.135:50400/match?q=GACGAGGAAATGGGTTTCAGTTT&k=0&no_gap=0&offset=0&limit=21
1.301 | 0.020 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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