GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:18:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Onychomys torridus genome assembly, chromosome: 2.
LR877189.1:155199386-155199405
AGTACAATTAGACCCATTGTACAGATGGGG155199386AAACTGAGGCGGGAGAAGAAAGTGTCTTGCCGCTGTAGCAGGAAGGTTAC
Onychomys arenicola genome assembly, chromosome: 2.
OX460348.1:155725564-155725583
AGTACAATTAGACCCATTGTACAGATGGGG155725564AAACTGAGGCGGGAGAAGAAAGTGTCTTGCCGCTGTAGCAGGAAGGTTAC
Onychomys leucogaster genome assembly, chromosome: 2.
OX460372.1:146199203-146199222
AGTACAATTAGACCCATTGTACAGATGGGG146199203AAACTGAGGCGGGAGAAGAAAGTGTCTTGCTGCTGTAGCAGGAAAGTTAC
Onychomys leucogaster genome assembly, chromosome: 2.
OX460419.1:152617618-152617637
AGTACAATTAGACCCATTGTACAGATGGGG152617618AAACTGAGGCGGGAGAAGAAAGTGTCTTGCTGCTGTAGCAGGAAGGTTAC
Onychomys arenicola genome assembly, chromosome: 2.
OX460443.1:157721579-157721598
AGTACAATTAGACCCATTGTACAGATGGGG157721579AAACTGAGGCGGGAGAAGAAAGTGTCTTGCCGCTGTAGCAGGAAGGTTAC
Onychomys torridus genome assembly, chromosome: 2.
OX460883.1:155199386-155199405
AGTACAATTAGACCCATTGTACAGATGGGG155199386AAACTGAGGCGGGAGAAGAAAGTGTCTTGCCGCTGTAGCAGGAAGGTTAC
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:7217456-7217475
AAGGAAAGGAAGCAAGCTACATCAATGGCG7217456AAACTGAGGCGGGAGAAGAAAACATAAACTACGTGAACATAAGTGAAATG
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:5447508-5447527
AAGGAAAGGAAGCAAACTACATCAATGGCG5447508AAACTGAGGCGGGAGAAGAAAACATAAACTACGTGAACATAAGTGAAATG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:25317304-25317323
CATTTCACTTGTGTTCACGTAGTTTATGTT25317304TTCTTCTCCCGCCTCAGTTTCGCCATTGATGTAGTTTGCTTCCTTTCCTT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:26710050-26710069
CATTTCACTTATGTTCATGTAGTTTATGTT26710050TTCTTCTCCCGCCTCAGTTTCGCCATTGATGTAGTTTGTTTCCATTCCTT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:23380923-23380942
CATTTCACCTATGTTCACGTAGTTTATGTT23380923TTCTTCTCCCGCCTCAGTTTCGCCATTGATGTAGTTTGCTTCCCTTCCTT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:23372464-23372483
CATTTCACCTATGTTCACGTAGTTTATGTT23372464TTCTTCTCCCGCCTCAGTTTCGCCATTGATGTAGTTTGCTTCCCTTCCTT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:23636627-23636646
CATTTCACTTATGTTCATGTAGTTTATGTT23636627TTCTTCTCCCGCCTCAGTTTCGCCATTGATGTAGTTTGTTTCCATTCCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAACTGAGGCGGGAGAAGAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACTGAGGCGGGAGAAGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=AAACTGAGGCGGGAGAAGAA&k=0&no_gap=0&offset=0&limit=50
0.139 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTCTCCCGCCTCAGTTT&k=0&no_gap=0&offset=0&limit=42
0.142 | 0.003 | cgi_end;

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