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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:18:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

PBA0217.CR_E04 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA0217_E04 3', mRNA sequence.
GW767765.1:659-678
TCCAAAGGACTACATTTGGCCCGTTGACAC659AAACTTATATTTGCAAGCACCTACAAGCCTTGTACAAGATGCACATTCTG
Vicia faba genome assembly, chromosome: 3.
OX451738.1:484344781-484344800
CCAATTCGAATAAATGATCATTCGTGGCTG484344781AAACTTATATTTGCAAGCACAAGTATGATAATTTGATCTCTTTGATCCAA
Alisma plantago-aquatica genome assembly, chromosome: 7.
OY856415.1:670843647-670843666
TTCTACATCGTGTTAAACAGTGAGAAACTA670843647AAACTTATATTTGCAAGCACATGAGATGTAGATATTACTGCAATACTTTA
Microcaecilia unicolor genome assembly, chromosome: 2.
LR594633.1:350126009-350126028
CATAAGATAAATTTGCATAGAATGGAGGTA350126009GTGCTTGCAAATATAAGTTTTGCATATTCATTGTGGGTATTCCAAAAACT
PBA0217.C21_E04 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA0217_E04 5', mRNA sequence.
GW767406.1:341-360
CAGAATGTGCATCTTGTACAAGGCTTGTAG341GTGCTTGCAAATATAAGTTTGTGTCAACGGGCCAAATGTAGTCCTTTGGA
Fragaria x ananassa cultivar Benihoppe chromosome 28.
CP139748.1:4335423-4335442
GACACCGAGTTTTTTGACTTGTAAGATTCT4335423GTGCTTGCAAATATAAGTTTGTTATTACTTTTGAGTTATCTTCAGATATG
Fragaria x ananassa cultivar Benihoppe chromosome 27.
CP139749.1:4992393-4992412
GACACCGAGTTTTTTGACTTGTAAGATTCT4992393GTGCTTGCAAATATAAGTTTGTTATTACTTTTGAGTTATCTTCAGATATG
Fragaria x ananassa cultivar Benihoppe chromosome 26.
CP139750.1:4985417-4985436
GACACCGAGTTTTTTGACTTGTAAGATTCT4985417GTGCTTGCAAATATAAGTTTGTTATTACTTTTGAGTTATCTTCAGATATG
Fragaria x ananassa cultivar Benihoppe chromosome 4.
CP139772.1:14095177-14095196
GACACCGAGTTTTTTGACTTGTAAGATTCT14095177GTGCTTGCAAATATAAGTTTGTTATTACTTTTGAGTTATCTTCATATATG
Fragaria x ananassa cultivar Benihoppe chromosome 3.
CP139773.1:13715965-13715984
GACACCGAATTTTTTGACTTGTAAGATTCT13715965GTGCTTGCAAATATAAGTTTGTTATTACTTTTGAGTTATCTTCAGATATG
Fragaria x ananassa cultivar Benihoppe chromosome 2.
CP139774.1:13398100-13398119
GACACCGAGTTTTTTGACTTGTAAGATTCT13398100GTGCTTGCAAATATAAGTTTGTTATTACTTTTGAGTTATCTTCAGATATG
Fragaria x ananassa cultivar Benihoppe chromosome 1.
CP139775.1:13875795-13875814
GACACCGAGTTTTTTGACTTGTAAGATTCT13875795GTGCTTGCAAATATAAGTTTGTTATTACTTTTGAGTTATCTTCAGATATG
Vicia faba genome assembly, chromosome: 5.
OX451740.1:519025226-519025245
TTGGATAAAAGGGTTCAAATTAATATACTT519025226GTGCTTGCAAATATAAGTTTGGACCACGAATGGTCATTTTCTCAAATCGA
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:1465255491-1465255510
TAGAGTATTGTAGTAATATCCAAATTTCAT1465255491GTGCTTGCAAATATAAGTTTTGGTTAACACAATGTAGGATATTAATTTCA
Triticum timopheevii genome assembly, chromosome: 6G.
OY997272.1:181635533-181635552
ATACACAGTCAAAAACCTCTTCTGTTAGTT181635533GTGCTTGCAAATATAAGTTTGTCAAATTTAGGAGTGTCTACTATTGTCAT
Nemurella pictetii genome assembly, chromosome: 7.
OV121122.1:5741484-5741503
TGTGTGCCGCAGCAGTTGCGAGGCGAAATT5741484GTGCTTGCAAATATAAGTTTTTGCCAGTAATATCACTGGATAAGCTAGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAACTTATATTTGCAAGCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACTTATATTTGCAAGCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.262 | 0.253 | search_plus_done; http://172.18.8.135:50400/match?q=AAACTTATATTTGCAAGCAC&k=0&no_gap=0&offset=0&limit=50
0.486 | 0.224 | search_minus_done; http://172.18.8.135:50400/match?q=GTGCTTGCAAATATAAGTTT&k=0&no_gap=0&offset=0&limit=47
0.494 | 0.009 | cgi_end;

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