GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:23:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:8977412-8977432
CATTTTCTGACATTTCACTTCAAAGTTGTC8977412AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:9804922-9804942
CATTTTCTGACATTTCACTTCAAAGTTGTC9804922AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:9188823-9188843
CATTTTCTGACATTTCACTTCAAAGTTGTC9188823AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:10007582-10007602
CATTTTCTGACATTTCACTTCAAAGTTGTC10007582AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:9099479-9099499
CATTTTCTGACATTTCACTTCAAAGTTGTC9099479AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:9218808-9218828
CATTTTCTGACATTTCACTTCAAAGTTGTC9218808AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:9903799-9903819
CATTTTCTGACATTTCACTTCAAAGTTGTC9903799AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:9949126-9949146
CATTTTCTGACATTTCACTTCAAAGTTGTC9949126AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:9720842-9720862
CATTTTCTGACATTTCACTTCAAAGTTGTC9720842AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:9823379-9823399
CATTTTCTGACATTTCACTTCAAAGTTGTC9823379AAACTTTCACTTTCACCCACGTAAAACAAGTAAGTACTTCCACTGACCTTA
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:32008184-32008204
TAAGGTCAGTGGAAGTACTTACTTGTTTTA32008184CGTGGGTGAAAGTGAAAGTTTGACAACTTTGAAGTGAAATGTCAGAAAATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAACTTTCACTTTCACCCACG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACTTTCACTTTCACCCACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.275 | 0.267 | search_plus_done; http://172.18.8.135:50400/match?q=AAACTTTCACTTTCACCCACG&k=0&no_gap=0&offset=0&limit=50
0.369 | 0.094 | search_minus_done; http://172.18.8.135:50400/match?q=CGTGGGTGAAAGTGAAAGTTT&k=0&no_gap=0&offset=0&limit=40
0.370 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).