GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 22:15:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES05B01, 5' end sequence.
FY384007.1:130-149
CTCAACACAGTATAGAGAGAGAGAGAGAGT130AAAGAAAGCAGCGGAGATCATGGCCAGCGAGGGGGCCAGCAGCGGCGGCG
Gossypium herbaceum isolate Zhongcao1 chromosome 12.
CP106691.1:462411-462430
ATCAAACAACTAGTAGATGGAAGATTATGA462411AAAGAAAGCAGCGGAGATCAACTCATAAGAAAACTTGTCATAACATGTCA
Gossypium herbaceum isolate Zhongcao1 chromosome 12.
CP106691.1:467694-467713
TTCAAACAACTAGTAGATGGAAGATTATGA467694AAAGAAAGCAGCGGAGATCAACTCATAAGAAAACTTGTCATAACATGTCA
Andrena dorsata genome assembly, chromosome: 2.
OV815488.1:10074056-10074075
AGAAGGGCGAGATGGGAGGTGGAGAAAGAG10074056AAAGAAAGCAGCGGAGATCATTATTAAGGAGTAATGAATAATACCGGAAA
Andrena marginata genome assembly, chromosome: 6.
OZ010664.1:25936838-25936857
AGAAGGGCGAAATGGGAGGTGGAGAAAGAG25936838AAAGAAAGCAGCGGAGATCATTATTAAGGAGTAATGAATAATACCGGAAA
Gossypium arboreum cultivar Shixiya1 chromosome 12.
CP053561.1:93872081-93872100
TGACATGTTATGACAAGTTTTCTTATGAGT93872081TGATCTCCGCTGCTTTCTTTTCATAATCTTCCATCTACTAGTTGTTTGAT
Gossypium herbaceum isolate GPA1alz chromosome 12.
CP106705.1:111438771-111438790
TGACATGTTATGACAAGTTTTCTTATGAGT111438771TGATCTCCGCTGCTTTCTTTTCATAATCTTCCATCTACTAGTTGTTTGAT
Myrica gale genome assembly, chromosome: 1.
OZ005598.1:21561099-21561118
TCCTCCACTGGGAGTTCGCGAACACCCCAG21561099TGATCTCCGCTGCTTTCTTTCCTAGAACGCCCGATCCACTCTCATCATTG
Chrysolina oricalcia genome assembly, chromosome: 17.
OX101825.2:43947043-43947062
TTGCAAGTTCTGTTCCTTTTTGGTCCTTTC43947043TGATCTCCGCTGCTTTCTTTTTAAGAGTTGACTTAAAATCAGTCCAAGTC
Andrena bicolor genome assembly, chromosome: 4.
OY482667.1:11643510-11643529
TTTCCGGTATTATTCATTACTCCTTAATAA11643510TGATCTCCGCTGCTTTCTTTCTCTTTCTCCACCTCCCATTTCGCCCTTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAGAAAGCAGCGGAGATCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGAAAGCAGCGGAGATCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.179 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGAAAGCAGCGGAGATCA&k=0&no_gap=0&offset=0&limit=50
0.211 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=TGATCTCCGCTGCTTTCTTT&k=0&no_gap=0&offset=0&limit=45
0.214 | 0.003 | cgi_end;

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