GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:19:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Halyzia sedecimguttata genome assembly, chromosome: 3.
OW569413.2:21170574-21170593
AAAAATTGAAAATTATCCATAAGCTGGGAT21170574AAAGAATTATTGACGCATGAAATTAAAGATCTCAGTTCTCGAATGTGCCT
17ACDHMS_UP_003_D09_28JAN2004_073 Brassica napus 17ACDHMS Brassica napus cDNA 5', mRNA sequence.
CN725895.1:340-359
AGTTCATCAAGCTCTAGCTCGGTGAGATTC340TCATGCGTCAATAATTCTTTTATAGCTTCTTTAGGTTAAGGAGAGTTGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019I24, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189251.2:91790-91809
AGTTCATCAAGCTCTAGCTCGGTGAGATTC91790TCATGCGTCAATAATTCTTTTATAGCTTCTTTAGGTTAAGGAGAGTTGAT
Brassica juncea dehydrin (DHN1) gene, complete cds.
AY130999.1:337-356
AGTTCATCAAGCTCTAGCTCGGTGAGATTC337TCATGCGTCAATAATTCTTTTATAGCTTCTTTAGGTTAAGGAGAGTTGAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:64432367-64432386
AGTTCATCAAGCTCTAGCTCGGTGAGATTC64432367TCATGCGTCAATAATTCTTTTATAGCTTCTTTAGGTTAAGGAGAGTTGAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:48306783-48306802
AGTTCATCAAGCTCTAGCTCGGTGAGATTC48306783TCATGCGTCAATAATTCTTTTATAGCTTCTTTAGGTTAAGGAGAGTTGAT
Brassica rapa genome, scaffold: A09.
LR031568.1:52558957-52558976
AGTTCATCAAGCTCTAGCTCGGTGAGATTC52558957TCATGCGTCAATAATTCTTTTATAGCTTCTTTAGGTTAAGGAGAGTTGAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:63082033-63082052
AGTTCATCAAGCTCTAGCTCGGTGAGATTC63082033TCATGCGTCAATAATTCTTTTATAGCTTCTTTAGGTTAAGGAGAGTTGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAGAATTATTGACGCATGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGAATTATTGACGCATGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.102 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGAATTATTGACGCATGA&k=0&no_gap=0&offset=0&limit=50
0.164 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=TCATGCGTCAATAATTCTTT&k=0&no_gap=0&offset=0&limit=49
0.169 | 0.005 | cgi_end;

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