GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-21 13:17:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Medicago truncatula EST, clone mtaehac110002e03.
AJ548236.1:190-208
TGAACACATAATGTGATGTGGTCCAAATCC190AAAGACAAGTGGTTGTGACTTCATGGTTTCCATAGAAAGGTAGTTTCAG
EST315316 DSIR Medicago truncatula cDNA clone pDSIR-26J11, mRNA sequence.
AW560268.1:193-211
TGAACACATAATGTGATGTGGTCCAAATCC193AAAGACAAGTGGTTGTGACTTCATGGTTTCCATAGAAAGGTAGTTTCAG
EST332736 KV3 Medicago truncatula cDNA clone pKV3-15D4, mRNA sequence.
AW773750.1:128-146
CGAACACATAATGTGATGTGGTCCAAATCC128AAAGACAAGTGGTTGTGACTTCATGGTTTCCATAGAAGGGTAGTTTCAG
EST506843 KV3 Medicago truncatula cDNA clone pKV3-39J3 5' end, mRNA sequence.
BG645224.1:196-214
TGAACACATAATGTGATGTGGTCCAAATCC196AAAGACAAGTGGTTGTGACTTCATGGTTTCCATAGAAGGGTAGTTTCAG
EST639488 MTUS Medicago truncatula cDNA clone MTUS-44C1, mRNA sequence.
CA921770.1:187-205
TGAACACATAATGTGATGTGGTCCAAATCC187AAAGACAAGTGGTTGTGACTTCATGGTTTCCATAGAAGGGTAGTTTCAG
GR__Eb12H06.f GR__Eb Gossypium raimondii cDNA clone GR__Eb12H06 5', mRNA sequence.
CO127726.1:253-271
TTACAACGAAGAAGAAGCCTCCTACGAAGC253AAAGACAAGTGGTTGTGACCGGGATGGGAGTAGTAACTCCGCTTGGACA
644-2 barrel medic leaf senescence cDNA-AFLP library Medicago truncatula cDNA clone 644-2, mRNA sequence.
GD185546.1:111-129
TGAACACATAATGTGATGTGGTCCAAATCC111AAAGACAAGTGGTTGTGACTTCATGGTTTCCATAGAAGGGTAGTTTCAG
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_361 mRNA sequence.
JL881565.1:219-237
TGAACACATAATGTGATGTGGTCCAAATCC219AAAGACAAGTGGTTGTGACTTCATGGTTTCCATAGAAGGGTAGTTTCAG
Medicago truncatula chromosome 6 clone mth2-174a5, WORKING DRAFT SEQUENCE, 4 ordered pieces.
AC174349.23:86658-86676
TGAACACATAATGTGATGTGGTCCAAATCC86658AAAGACAAGTGGTTGTGACTTCATGGTTTCCATAGAAGGGTAGTTTCAG
Macaca mulatta chromosome UNKNOWN clone CH250-466G4, WORKING DRAFT SEQUENCE.
AC210625.2:54930-54948
ACTAAATGTAAAATCACTTCAGAACAATCA54930AAAGACAAGTGGTTGTGACCATAAGCACAATGGAATGGAAAGAATAATA
Gossypium herbaceum isolate Zhongcao1 chromosome 13.
CP106688.1:5420558-5420576
TTACAACGAAGAAGAAGCCTCCTACGAAGC5420558AAAGACAAGTGGTTGTGACTGGGATGGGAGTAGTAACTCCGCTTGGACA
Sambucus nigra genome assembly, chromosome: 1.
OX422207.1:787424994-787425012
CTCAGTTACCTAAGGCATAGTTCACATGGC787424994AAAGACAAGTGGTTGTGACTACCATCAAGCTGATAACATAATAGTAGAG
Medicago lupulina genome assembly, chromosome: 8.
OY283146.1:53857429-53857447
GAACACATAAATGTGATGTGGTCCAAATCC53857429AAAGACAAGTGGTTGTGACTTCATGGTTTCCATAGAAGAGTAGTTTCAG
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:1080246604-1080246622
ACCAACTGTAGTGCTAGCCATGGGTGTGCA1080246604AAAGACAAGTGGTTGTGACCGTGGGCACAACAAAGGCAGGCGTGATGGT
Siphonodentalium dalli isolate Sc116.8C chromosome II.
CP136062.1:224437535-224437553
GTGAAATACTTTACAGTCCCAGATCCGAAA224437535AAAGACAAGTGGTTGTGACTTGGGGACTTTCCTTAAGCAAAGGAAGCCC
Siphonodentalium dalli isolate Sc116.8C chromosome IX.
CP136069.1:102463018-102463036
TGAAATACTTTACAGAGTCCCAGATCCGAA102463018AAAGACAAGTGGTTGTGACTTGGGGACTTTCCTTAAGCAAAGGAAGACC
Schrankia costaestrigalis genome assembly, chromosome: 10.
FR997835.1:17658645-17658663
TTATAGTTTATATGTTACTTACGTTTATGT17658645AAAGACAAGTGGTTGTGACCTTCAGTGTGAATAAAAAAAGGAGTTTTGT
Hecatera dysodea genome assembly, chromosome: 11.
HG995297.1:18430327-18430345
GGTTAGTTAATCCTGTACTGGTGTGCATGT18430327AAAGACAAGTGGTTGTGACCTTCTGTGTAGTAAAAAAGGAGTTTGTTCT
Euproctis similis genome assembly, chromosome: 3.
LR990105.1:23739499-23739517
TATACCTGTACTGTGGTCTGCATGCATGCT23739499AAAGACAAGTGGTTGTGACCTTCTGTGTTTAAAAGGAGTTTGTTAATAT
Melanchra persicariae genome assembly, chromosome: 12.
OX376655.1:18626193-18626211
GGTTAGTTGTACCCGTACTGGTGTGCATGT18626193AAAGACAAGTGGTTGTGACCTTCTGTGTTGTAAAAAAGGAGTTTGTTCT
Lacanobia wlatinum genome assembly, chromosome: 8.
OX388030.1:25858445-25858463
GTTTAGTTGATCCTGTACTGGTGTGGATGT25858445AAAGACAAGTGGTTGTGACCTTCTGTGTTGTAATAAAAAAGGAGTTTGT
Lacanobia oleracea genome assembly, chromosome: 18.
OX493403.1:22205121-22205139
GGTTAGTTAATCCCGTACCGGTGTGCATGT22205121AAAGACAAGTGGTTGTGACCTTCTGTGTTGTAAAAAGGAGTTTGTTCTC
Epinotia brunnichana genome assembly, chromosome: 17.
OY977952.1:28002741-28002759
AAACGTTTCAGATTTTTGAGATTTGGTGGC28002741AAAGACAAGTGGTTGTGACAGAGAAAAAAAAAATATTTCGACAATTCTA
Ceramica pisi genome assembly, chromosome: 15.
OY982542.1:20282264-20282282
GGTTATTTGATCCCGTACTGGTGTGCATGT20282264AAAGACAAGTGGTTGTGACCTTCTGTGTTGTAAAAAAGGAGTTTGTTCT
Phania funesta genome assembly, chromosome: 1.
OZ010652.1:69064835-69064853
CTAAATCTTTTTCTAAATTCTTCATTAGAA69064835AAAGACAAGTGGTTGTGACGTTCAAGTACACGTTTATTAGAAGAAATAC
Macaca mulatta Y Chr BAC CH250-477E7 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence.
AC225635.4:86216-86234
TATTATTCTTTCCATTCCATTGTGCTTATG86216GTCACAACCACTTGTCTTTTGATTGTTCTGAAGTGATTTTACATTTAGT
Sequence 2133 from Patent WO2009037329.
GN119237.1:1145-1163
CTGAAACTACCCTTCTATGGAAACCATGAA1145GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 2305 from Patent WO2009037329.
GN119409.1:1164-1182
CTGAAACCACCCTTCTATGGAAACCATGAA1164GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 12988 from Patent WO2009037329.
GN130092.1:1145-1163
CTGAAACTACCCTTCTATGGAAACCATGAA1145GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 13160 from Patent WO2009037329.
GN130264.1:1164-1182
CTGAAACCACCCTTCTATGGAAACCATGAA1164GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 21169 from Patent EP2194140.
HC911016.1:1145-1163
CTGAAACTACCCTTCTATGGAAACCATGAA1145GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 21339 from Patent EP2194140.
HC911186.1:1164-1182
CTGAAACCACCCTTCTATGGAAACCATGAA1164GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 2133 from patent US 8809059.
HK081185.1:1145-1163
CTGAAACTACCCTTCTATGGAAACCATGAA1145GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 2305 from patent US 8809059.
HK081271.1:1164-1182
CTGAAACCACCCTTCTATGGAAACCATGAA1164GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 12988 from patent US 8809059.
HK086539.1:1145-1163
CTGAAACTACCCTTCTATGGAAACCATGAA1145GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 13160 from patent US 8809059.
HK086625.1:1164-1182
CTGAAACCACCCTTCTATGGAAACCATGAA1164GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 21169 from patent US 8952217.
HK431165.1:1145-1163
CTGAAACTACCCTTCTATGGAAACCATGAA1145GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 21339 from patent US 8952217.
HK431250.1:1164-1182
CTGAAACCACCCTTCTATGGAAACCATGAA1164GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 60364 from patent US 8952217.
HK450521.1:1145-1163
CTGAAACTACCCTTCTATGGAAACCATGAA1145GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Sequence 60534 from patent US 8952217.
HK450606.1:1164-1182
CTGAAACCACCCTTCTATGGAAACCATGAA1164GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Medicago truncatula EST MtBA24H09R1 : T7 end of clone MtBA24H09 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL368505.1:318-336
CTGAAACTACCCTTCTATGGAAACCATGAA318GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
N201023e rootphos(-) Medicago truncatula cDNA clone MHRP-23G4, mRNA sequence.
AW329754.2:413-431
CTGAAACTACCCTTCTATGGAAACCATGAA413GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
EST421729 MGHG Medicago truncatula cDNA clone pMGHG-7N1, mRNA sequence.
BE942150.1:100-118
CTGAAACTACCCTTCTATGGAAACCATGAA100GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
EST429272 GVSN Medicago truncatula cDNA clone pGVSN-1M20, mRNA sequence.
BE997549.1:370-388
CTGAAACTACCCTTCTATGGAAACCATGAA370GTCACAACCACTTGTCTTTGGATTTG
NF099D05LF1F1043 Developing leaf Medicago truncatula cDNA clone NF099D05LF 5', mRNA sequence.
BG453726.1:148-166
CTGAAACTACCCTTCTATGGAAACCATGAA148GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
EST482043 GVN Medicago truncatula cDNA clone pGVN-39O14 5' end, mRNA sequence.
BG580318.1:308-326
CTGAAACTACCCTTCTATGGAAACCATGAA308GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
EST489852 MHRP- Medicago truncatula cDNA clone pMHRP-38B10, mRNA sequence.
BG588043.1:372-390
CTGAAACTACCCTTCTATGGAAACCATGAA372GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
EST490056 MHRP- Medicago truncatula cDNA clone pMHRP-41F16, mRNA sequence.
BG588247.1:347-365
CTGAAACTACCCTTCTATGGAAACCATGAA347GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
EST5313748 GESD Medicago truncatula cDNA clone pGESD16L19 5' end, mRNA sequence.
BI311998.1:609-627
CTGAAACTACCCTTCTATGGAAACCATGAA609GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
NF006G07DT1F1053 Drought Medicago truncatula cDNA clone NF006G07DT 5', mRNA sequence.
BQ143741.1:265-283
CTGAAACTACCCTTCTATGGAAACCATGAA265GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
NF006G03GS1F1023 Germinating Seed Medicago truncatula cDNA clone NF006G03GS 5', mRNA sequence.
BQ145407.1:357-375
CTGAAACTACCCTTCTATGGAAACCATGAA357GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
NF046B05IR1F1044 Irradiated Medicago truncatula cDNA clone NF046B05IR 5', mRNA sequence.
BQ153754.1:493-511
CTGAAACTACCCTTCTATGGAAACCATGAA493GTCACAACCACTTGTCTTTTGGATTTGGACCACATCACATTATGTGTTC
NF078G09IR1F1072 Irradiated Medicago truncatula cDNA clone NF078G09IR 5', mRNA sequence.
BQ155295.1:493-511
CTGAAACTACCCTTCTATGGAAACCATGAA493GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
s13dNF06G03GS023_455706 Germinating Seed Medicago truncatula cDNA, mRNA sequence.
CX536266.1:241-259
CTGAAACTACCCTTCTATGGAAACCATGAA241GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
s13dNF51A12GS085_458120 Germinating Seed Medicago truncatula cDNA, mRNA sequence.
CX537450.1:241-259
CTGAAACTACCCTTCTATGGAAACCATGAA241GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
AC1866 NOLLY Medicago truncatula cDNA 5', mRNA sequence.
DY616388.1:94-112
CTGAAACTACCCTTCTATGGAAACCATGAA94GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
AC2278 NOLLY Medicago truncatula cDNA 5', mRNA sequence.
DY616716.1:421-439
CTGAAACTACCCTTCTATGGAAACCATGAA421GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
AC2295 NOLLY Medicago truncatula cDNA 5', mRNA sequence.
DY616729.1:305-323
CTGAAACTACCCTTCTATGGAAACCATGAA305GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
TSA: Medicago sativa cultivar Chilean F0D_7644 mRNA sequence.
JL874071.1:1168-1186
CTGAAACTACCCTTCTATGGAAACCATGAA1168GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_363 mRNA sequence.
JL881567.1:1182-1200
CTGAAACTACCCTTCTATGGAAACCATGAA1182GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Medicago truncatula clone JCVI-FLMt-17F7 unknown mRNA.
BT134149.1:456-474
CTGAAACTACCCTTTTATGGAAACCATGAA456GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Gossypium raimondii isolate D5-4 chromosome D5_13.
CP032565.1:54691584-54691602
TGTCCAAGCGGAGTTACTACTCCCATCCCG54691584GTCACAACCACTTGTCTTTGCTTCGTAGGAGGCTTCTTCTTCGTTGTAA
Gossypium herbaceum isolate GPA1alz chromosome 13.
CP106700.1:118173686-118173704
TGTCCAAGCGGAGTTACTACTCCCATCCCA118173686GTCACAACCACTTGTCTTTGCTTCGTAGGAGGCTTCTTCTTCGTTGTAA
Medicago arabica genome assembly, chromosome: 3.
OX326966.1:10129581-10129599
CTGAAACTACCCTTCTATGGAAACCATGAA10129581GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
GS (MtGSa)=glutamine synthetase {3' region, last exon} [Medicago truncatula, cv Jemalong, seeds, Genomic, 306 nt].
S71526.1:155-173
CTGAAACTACCCTTCTATGGAAACCATGAA155GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Medicago sativa cytosolic glutamine synthetase (GS1) mRNA, complete cds.
U15591.1:1164-1182
CTGAAACCACCCTTCTATGGAAACCATGAA1164GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
M.truncatula mRNA for glutamine synthetase, 1425bp.
Y10267.1:1145-1163
CTGAAACTACCCTTCTATGGAAACCATGAA1145GTCACAACCACTTGTCTTTGGATTTGGACCACATCACATTATGTGTTCA
Staphylococcus arlettae strain IVB6235 chromosome, complete genome.
CP094803.1:185407-185425
ATTTGGAGGTTTCCTGGTCTTACCTACAAT185407GTCACAACCACTTGTCTTTGTCCTAGCGGTGTTAGCAAATATGGTTGTT
Staphylococcus arlettae strain IVB6234 chromosome, complete genome.
CP094806.1:261920-261938
ATTTGGAGGTTTCCTGGTCTTACCTACAAT261920GTCACAACCACTTGTCTTTGTCCTAGCGGTGTTAGCAAATATGGTTGTT
Trypanosoma vivax Y486 annotated genomic contig, chromosome 8.
HE573024.1:1078603-1078621
CACCTCTCTGAACCGGCCGACTGCAAAACG1078603GTCACAACCACTTGTCTTTGAACAAAATCATTCGTCCGCGCCCATCGCC
Pecten maximus genome assembly, chromosome: 4.
LR736841.1:8594131-8594149
TAACGTATGATTGTTTTCGATTAGTATGAT8594131GTCACAACCACTTGTCTTTATAGGGAGAAACAATGGCTAAGGTCTACTA
Mamestra brassicae genome assembly, chromosome: 13.
LR991000.1:3118283-3118301
AGAACAAACTCCTTTTTTACAACACAGAAG3118283GTCACAACCACTTGTCTTTACATGTACACCAGTACAGGATCAACTAACC
Xestia ashworthii genome assembly, chromosome: 12.
OX465559.1:3697064-3697082
AGAACAAACTCCTTTTTTACAACACAGAAG3697064GTCACAACCACTTGTCTTTACATGCACACCAGTACAGGATCAACTAACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).