GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 10:48:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rhinatrema bivittatum genome assembly, chromosome: 9.
LR584395.1:178923365-178923384
CACACAAACATAGCAATAATTTCAGCAGAT178923365AAAGACCACATCACCCACCTTGGTTGCCTACTTTTTTCTGTCACATACCT
Erpetoichthys calabaricus genome assembly, chromosome: 1.
LR536432.2:273208341-273208360
AGTATAGTGGACAAGCAGCCAAAGAAGTCA273208341AGGTGGGTGATGTGGTCTTTGCCATTGGCTTGAGTCAGGACTTTTGTGGC
Atr02b_137_C10_C011.g1 FGP Female Amborella trichopoda Amborella trichopoda cDNA clone 122CST_E19 5', mRNA sequence.
FD442289.1:610-629
AACTAATTTTTATTAAAAATTCTCCTTTTT610AGGTGGGTGATGTGGTCTTTGTAAATCTAACACAGTGATGAATTAATGTA
Tetraodon nigroviridis genome survey sequence T7 end of clone 164L22 of library G from Tetraodon nigroviridis.
AL213695.1:479-498
GTCCCCAGTGTGGCCTCTCCCCCACGGGGG479AGGTGGGTGATGTGGTCTTTAAGGGAAGGGTGTTTCCACGGGGGCGTCCT
Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone 011O16 of library G from Tetraodon nigroviridis.
AL236106.1:17-36
CTCTCCCCCACGGGGG17AGGTGGGTGATGTGGTCTTTAAGGGAAGGGTGTTTCCACGGGGGCGTCCT
Tetraodon nigroviridis genome survey sequence T7 end of clone 007J13 of library H from Tetraodon nigroviridis.
AL305270.1:231-250
GTCCCCAGTGTGGCCTCTCCCCCACGGGGG231AGGTGGGTGATGTGGTCTTTAAGGGAAGGGTGTTTCCACGGGGGCGTCCT
Tetraodon nigroviridis full-length cDNA.
CR671682.2:476-495
GTCCCCAGTGTGGCCTCTCCCCCACGGGGG476AGGTGGGTGATGTGGTCTTTAAGGGAAGGGTGTGTCCACGGGGGCGTCTC
Tetraodon nigroviridis full-length cDNA.
CR700685.2:319-338
GTCCCCAGTGTGGCCTCTCCCCCACGGGGG319AGGTGGGTGATGTGGTCTTTAAGGGAAGGGTGTTTCCACGGGGGCGTCCT
Potentilla sterilis genome assembly, chromosome: 10.
OY821763.1:42618788-42618807
TGCCTCCGCATTCTAATGAATACGTCAAGA42618788AGGTGGGTGATGTGGTCTTTCTTTAGCTTTGATTTCACCACCACATCATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAGACCACATCACCCACCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGACCACATCACCCACCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGACCACATCACCCACCT&k=0&no_gap=0&offset=0&limit=50
0.191 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=AGGTGGGTGATGTGGTCTTT&k=0&no_gap=0&offset=0&limit=49
0.197 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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