GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:59:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:60354568-60354587
AGTTCTTTTAACAAAAAAAATTCCAAACAC60354568AAAGACTCGAGACCAATACCATTATTTAAGATGAATTACACACACATATT
Schistosoma turkestanicum genome assembly, chromosome: 3.
OX103973.1:35949329-35949348
GTACCTGCATCTCAAAGTTATTATTCACTA35949329AAAGACTCGAGACCAATACCTTTCGTTATGACCTCCATCGCAATGGGGTG
Lotus japonicus genomic DNA, chromosome 4, clone: LjB11J20, BM0992.
AP007729.2:60877-60896
AATATGTGTGTGTAATTCATCTTAAATAAT60877GGTATTGGTCTCGAGTCTTTGTGTTTGGAATTTTTTTTGTTAAAAGAACT
Lotus japonicus genomic DNA, chromosome 4, clone: LjB26F10, BM1397.
AP008045.2:14437-14456
AATATGTGTGTGTAATTCATCTTAAATAAT14437GGTATTGGTCTCGAGTCTTTGTGTTTGGAATTTTTTTTGTTAAAAGAACT
Lotus japonicus genomic DNA, chromosome 4, clone: LjT46M09, TM1411.
AP008056.2:25091-25110
AATATGTGTGTGTAATTCATCTTAAATAAT25091GGTATTGGTCTCGAGTCTTTGTGTTTGGAATTTTTTTTGTTAAAAGAACT
Fragum fragum genome assembly, chromosome: 16.
OX336380.1:27074634-27074653
TCACGGTAAATATGTTCCATGCATGGCGCA27074634GGTATTGGTCTCGAGTCTTTCAATAGCCAACACCGTCATTCGGCGCGAGT
Melieria crassipennis genome assembly, chromosome: 2.
OY764962.1:121384739-121384758
AATTGGCACTGCACAGCAGTGTACCGTATC121384739GGTATTGGTCTCGAGTCTTTGTGTGCACACGCGCGATTAAATGTCACTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAGACTCGAGACCAATACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGACTCGAGACCAATACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGACTCGAGACCAATACC&k=0&no_gap=0&offset=0&limit=50
0.108 | 0.015 | search_minus_done; http://172.18.8.135:50400/match?q=GGTATTGGTCTCGAGTCTTT&k=0&no_gap=0&offset=0&limit=48
0.111 | 0.003 | cgi_end;

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