GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 05:04:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS24058C10 KS24 Capsicum annuum cDNA, mRNA sequence.
GD123264.1:160-179
ATAGATAAATTTTATTCCTTCCTTAAAAAG160AAAGAGGGGTCGTTTTCGATAGACCATCCTCGACTCAAAACAGATGGAAA
TSA: Capsicum annuum MA_MegaContig_19975, mRNA sequence.
JW158740.1:175-194
ATAGATAAATTTTATTCCTTCCTTAAAAAG175AAAGAGGGGTCGTTTTCGATAGACCATCCTCGACTCAAAACAGATGGAAA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 4.
CP124728.1:10168181-10168200
ATAGATAAATTTTATTCCTTCCTTAAAAAG10168181AAAGAGGGGTCGTTTTCGATAGACCATCCTCGACTCAAAACAGATGGAAA
Capsicum annuum Takanotsume DNA, chromosome 4, sequence.
AP026699.1:243050932-243050951
TTTCCATCTGTTTTGAGTCGAGGATGGTCT243050932ATCGAAAACGACCCCTCTTTCTTTTTAAGGAAGGAATAAAATTTATCTAT
Hydrotaea cyrtoneurina genome assembly, chromosome: 1.
OY282512.1:48560247-48560266
CTGTTGTGCCAAGCCAAACTGCCAGTACTC48560247ATCGAAAACGACCCCTCTTTCACGATGTTGTCAAACACGAACATGTTGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAGAGGGGTCGTTTTCGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGAGGGGTCGTTTTCGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.202 | 0.193 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGAGGGGTCGTTTTCGAT&k=0&no_gap=0&offset=0&limit=50
0.230 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=ATCGAAAACGACCCCTCTTT&k=0&no_gap=0&offset=0&limit=47
0.231 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).