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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 17:16:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lipophrys pholis genome assembly, chromosome: 22.
OY726554.1:2221101-2221120
GAGGTTCCAAGACCAAGATATGTGGTTTCC2221101AAAGCAAAACCTGCCTCTGACGTTCTCCTGTCCCGCTGAAACTTATTGAC
Brassica oleracea var. viridis mRNA, clone: KALE-001C07, 5' end sequence.
DK456003.1:634-653
TCTTCTGCTGCTGCTGCTACCAGCCCATCC634AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-036N08, 5' end sequence.
DK469629.1:587-606
TCTTCTGCTGCTGCTGCTACCAGCCCATCC587AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-037G20, 5' end sequence.
DK469856.1:587-606
TCTTCTGCTGCTGCTGCTACCAGCCCATCC587AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-064D21, 5' end sequence.
DK480107.1:585-604
TCTTCTGCTGCTGCTGCTACCAGCCCATCC585AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-070G19, 5' end sequence.
DK482471.1:585-604
TCTTCTGCTGCTGCTGCTACCAGCCCATCC585AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-076L05, 5' end sequence.
DK484873.1:579-598
TCTTCTGCTGCTGCTGCTACCAGCCCATCC579AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-117E19, 5' end sequence.
DK500404.1:579-598
TCTTCTGCTGCTGCTGCTACCAGCCCATCC579AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-128E03, 5' end sequence.
DK504597.1:638-657
TCTTCTGCTGCTGCTGCTACCAGCCCATCC638AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-155L07, 5' end sequence.
DK515085.1:561-580
TCTTCTGCTGCTGCTGCTACCAGCCCATCC561AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-156N10, 5' end sequence.
DK515519.1:579-598
TCTTCTGCTGCTGCTGCTACCAGCCCATCC579AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-001C07, 3' end sequence.
DK515635.1:127-146
TCTTCTGCTGCTGCTGCTACCAGCCCATCC127AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-036N08, 3' end sequence.
DK529248.1:361-380
TCTTCTGCTGCTGCTGCTACCAGCCCATCC361AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-037G20, 3' end sequence.
DK529476.1:364-383
TCTTCTGCTGCTGCTGCTACCAGCCCATCC364AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-064D21, 3' end sequence.
DK539703.1:183-202
TCTTCTGCTGCTGCTGCTACCAGCCCATCC183AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-070G19, 3' end sequence.
DK542068.1:230-249
TCTTCTGCTGCTGCTGCTACCAGCCCATCC230AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-076L05, 3' end sequence.
DK544467.1:233-252
TCTTCTGCTGCTGCTGCTACCAGCCCATCC233AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-117E19, 3' end sequence.
DK559970.1:205-224
TCTTCTGCTGCTGCTGCTACCAGCCCATCC205AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-128E03, 3' end sequence.
DK564161.1:187-206
TCTTCTGCTGCTGCTGCTACCAGCCCATCC187AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-155L07, 3' end sequence.
DK574657.1:206-225
TCTTCTGCTGCTGCTGCTACCAGCCCATCC206AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Brassica oleracea var. viridis mRNA, clone: KALE-156N10, 3' end sequence.
DK575091.1:196-215
TCTTCTGCTGCTGCTGCTACCAGCCCATCC196AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
48RDOAM_UP_022_H08_14AUG2004_050 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
DY015326.1:487-506
TCTTCTGCTGCTGCTGCTACCAGCCCATCC487AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
47RDOAH_UP_039_E12_17AUG2004_088 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY029253.1:572-591
TCTTCTGCTGCTGCTGCTACCAGCCCATCC572AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
hh_Ab_Pinky2003_000014867 Cichlid Pinky cDNA library 2003 Haplochromis burtoni cDNA clone hh_Ab_Pinky2003_000014867 5', mRNA sequence.
DY626413.1:163-182
AAAGGCCAAATATGCACTTCAAATAAACAC163AAAGCAAAACCTGCCTCTGAGAACAACGTCTTCATAGAGCTACAAAGGTT
RR2BF14TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV539216.1:513-532
TCTGCTGCTGCTGCTGCTGCTAGCCCATCC513AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR3A389TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV547878.1:494-513
TCAGTTTCTGCTGCTGCTGCTAGCCCATCC494AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCCGCATA
BR073859 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-031E03 5', mRNA sequence.
EX087569.1:558-577
GTGTCTGCTTCTGCTGATGCTAGCCCATCC558AAAGCAAAACCTGCCTCTGAGAAAGTGTCTCCGTTCATAAATGCTGCATA
BR075242 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-055E01 5', mRNA sequence.
EX088952.1:559-578
GTGTCTGCTTCTGCTGATGCTAGCCCATCC559AAAGCAAAACCTGCCTCTGAGAAAGTGTCTCCGTTCATAAATGCTGCATA
BR080514 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-147A11 5', mRNA sequence.
EX094224.1:492-511
GTGTCTGCTTCTGCTGATGCTAGCCCATCC492AAAGCAAAACCTGCCTCTGAGAAAGTGTCTCCGTTCATAAATGCTGCATA
RR1CR62TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX749838.1:534-553
GTTTCTGCTGCTGCTGCTGCTACCCCATCC534AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR1CV67TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX750187.1:531-550
GTTTCTGCTGCTGCTGCTGCTACCCCATCC531AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR4BS70TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX770519.1:542-561
GTTTCTGCTGCTGCTGCTGCTACCCCATCC542AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR4BV52TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX770762.1:560-579
TCAGTTTCTGCTGCTGCTGCTACCCCATCC560AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCTTA
RR3DZ52TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY915889.1:538-557
CCAGTTTCTGCTGCTGCTGCTAGCCCATCC538AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR4DK84TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922910.1:492-511
GTTTCTGCTGCTGCTGCTGCTACCCCATCC492AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR2EN01TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD540574.1:564-583
GTTTCTGCTGCTGCTGCTGCTAGCCCATCC564AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR2EN23TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD540593.1:667-686
GTTTCTGCTGCTGCTGCTGCTAGCCCATCC667AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR2EO08TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD540658.1:543-562
TCTGCTGCTGCTGCTGCTGCTAGCCCATCC543AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR3F223TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD549978.1:562-581
TCAGTTTCTGCTGCTGCTGCTAGCCCATCC562AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RS1GP38TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD940429.1:591-610
GCTGCTGCTGCTGCTACCGCTACCCCATCC591AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCTTA
RR4G489JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD983080.1:455-474
AAATCAGTTTCTGCTACTGCTGCCCCATCC455AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTCATTAATGCTGCATA
RR4FX82TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD986294.1:542-561
GTTTCTGCTGCTGCTGCTGCTACCCCATCC542AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
RR4GX04TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD989233.1:524-543
TCAGTTTCTGCTGCTGCTGCTACCCCATCC524AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCTTA
Raphanus sativus mRNA, clone: RSCF01I03, 5' end sequence.
FY428188.1:440-459
GTTTCTGCTGCTGCTGCTGCTACCCCATCC440AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
Raphanus sativus mRNA, clone: RSCL19L12, 5' end sequence.
FY439463.1:528-547
GTTTCTGCTGCTGCTGCTGCTACCCCATCC528AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
Raphanus sativus mRNA, clone: RSCR12C07, 5' end sequence.
FY443437.1:313-332
GTTTCTGCTGCTGCTGCTGCTACCCCATCC313AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
Raphanus sativus mRNA, clone: RSCS05G03, 5' end sequence.
FY447691.1:460-479
GTTTCTGCTGCTGCTGCTGCTACCCCATCC460AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
0278751 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO951786.1:411-430
GTGTCTGCTTCTGCTGATGCTAGCCCATCC411AAAGCAAAACCTGCCTCTGAGAAAGTGTCTCCGTTCATAAATGCTGCATA
RS229 salt stress treated wild radish leaf library Raphanus sativus var. niger cDNA 5' similar to biotin/lipoyl attachment domain-containing protein, mRNA sequence.
HS107039.1:491-510
GTTTCTGCTGCTGCTGCTGCTACCCCATCC491AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
TSA: Raphanus sativus RS15733 mRNA sequence.
JT800280.1:511-530
GTTTCTGCTGCTGCTGCTGCTACCCCATCC511AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:38990484-38990503
TCTTCTGCTGCTGCTGCTACCAGCCCATCC38990484AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCGTTCATAAACGCTGCATA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:30209295-30209314
GTTTCTGCTGCTGCTGCTGCTACCCCATCC30209295AAAGCAAAACCTGCCTCTGAAAAAGTGTCTCCATTTATTAATGCTGCATA
Dolomedes plantarius genome assembly, chromosome: 3.
OU015492.1:77157310-77157329
GACTCTAATGGAAATGGAGCACAAACTGAT77157310AAAGCAAAACCTGCCTCTGATGCTAGTGATGTTTGCAAGGAAAAACTTGA
Hydrotaea cyrtoneurina genome assembly, chromosome: 3.
OY282514.1:64934317-64934336
CGCAAAGTCTGCCCCTATCTACCGCATCAC64934317AAAGCAAAACCTGCCTCTGACTGTCTATTTTACACATGTGTGTCGTGACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAGCAAAACCTGCCTCTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGCAAAACCTGCCTCTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.077 | 3.069 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGCAAAACCTGCCTCTGA&k=0&no_gap=0&offset=0&limit=50
3.130 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGAGGCAGGTTTTGCTTT&k=0&no_gap=0&offset=0&limit=0
3.130 | 0.000 | cgi_end;

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