GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 16:12:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Heterocephalus glaber genome assembly, chromosome: 14.
OX090922.1:524600-524619
TAGGGGAGTGGCTACAACAAGCACTCTGAG524600AAAGCACCCAGAAAGAAGCAAGAATTAAAGGACTGTCACCCCTCTGTATC
Heterocephalus glaber genome assembly, chromosome: 20.
OX090960.1:20493678-20493697
AATGCGAGAGCTGGATTTTCCTGGAAACCC20493678AAAGCACCCAGAAAGAAGCACCGAAGCAGTCCAGGACACTCGGCACAACT
Heterocephalus glaber genome assembly, chromosome: 21.
OZ001086.1:524600-524619
TAGGGGAGTGGCTACAACAAGCACTCTGAG524600AAAGCACCCAGAAAGAAGCAAGAATTAAAGGACTGTCACCCCTCTGTATC
Heterocephalus glaber genome assembly, chromosome: 21.
OZ001129.1:380816-380835
TAGGGGAGTGGCTACAACAAGCACTCTGAG380816AAAGCACCCAGAAAGAAGCAAGAATTAAAGGACTGTCACCCCTCTGTATC
Sarcophilus harrisii genome assembly, chromosome: 3.
LR735556.1:171116072-171116091
CAGAATTATCAGGTAAAGGATAAAATACTG171116072AAAGCACCCAGAAAGAAGCAATTCACATATCGAGGAACCATAGTAAGCAT
Chroicocephalus ridibundus genome assembly, chromosome: 3.
OZ001735.1:75060652-75060671
GGCACAAGAACATTCAAGTCCAGGTCTACA75060652AAAGCACCCAGAAAGAAGCAAGAGTAAGCCATTAAACCTCACCTCAGTGA
Sequence 98681 from patent US 9029636.
HL007745.1:155-174
TGCTCCACTTCCGACCCCGTTCGGTGTCCG155AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
sf07e06.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-1595 5' similar to TR:P73680 P73680 HYPOTHETICAL 32.9 KD PROTEIN, mRNA sequence.
AW201808.1:198-217
TGCTCCACTTCCGACCCCGTTCGGTGTCCG198AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
sad32f02.y1 Gm-c1074 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1074-2163 5' similar to TR:Q9SFB3 Q9SFB3 F17A17.35 PROTEIN, mRNA sequence.
BG551056.1:5-24
GGCG5AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGNGAAGAAGATAGA
sah93a01.y1 Gm-c1050 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1050-3458 5' similar to TR:Q9SFB3 Q9SFB3 F17A17.35 PROTEIN, mRNA sequence.
BI471059.1:158-177
TGCTCCACTTCCGACCCCGTTCGGTGTCCG158AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
sai17d12.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-3623 5' similar to TR:Q9SFB3 Q9SFB3 F17A17.35 PROTEIN, mRNA sequence.
BI701577.1:42-61
TGCTCCACTTCCGACCCCGTTCGGTGTCCG42AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
saj83h11.y1 Gm-c1074 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1074-3430 5' similar to TR:Q9SFB3 Q9SFB3 F17A17.35 PROTEIN, mRNA sequence.
BM188033.1:71-90
TGCTCCACTTCCGACCCCGTTCGGTGTCCG71AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
sam64h07.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-4214 5' similar to TR:Q9SFB3 Q9SFB3 F17A17.35 PROTEIN, mRNA sequence.
BM892837.1:197-216
TGCTCCACTTCCGACCCCGTTCGGTGTCCG197AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
san50e03.y1 Gm-c1052 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1052-3269 5' similar to TR:Q9SFB3 Q9SFB3 F17A17.35 PROTEIN, mRNA sequence.
BQ094683.1:100-119
TGCTCCACTTCCGACCCCGTTCGGTGTCCG100AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
san69c08.y1 Gm-c1052 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1052-4744 5' similar to TR:Q9SFB3 Q9SFB3 F17A17.35 PROTEIN, mRNA sequence.
BQ253370.1:158-177
TGCTCCACTTCCGACCCCGTTCGGTGTCCG158AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
san98g11.y2 Gm-c1054 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1054-2997 5' similar to TR:Q9SFB3 Q9SFB3 F17A17.35 PROTEIN, mRNA sequence.
BQ297557.1:173-192
TGCTCCACTTCCGACCCCGTTCGGTGTCCG173AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
sav65c06.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-7812 5' similar to TR:Q9SFB3 Q9SFB3 F17A17.35 PROTEIN, mRNA sequence.
CB063844.1:131-150
TGCTCCACTTCCGACCCCGTTCGGTGTCCG131AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
GLMCY57TF JCVI-SOY2 Glycine max cDNA 5', mRNA sequence.
EV276922.1:183-202
TGCTCCACTTCCGACCCCGTTCGGTGTCCG183AAAGCACCCAGAAAGAAGCACCTGAAGCGGTTCTCGGAGAAGAAGAAGAA
Glycine max DNA, BAC clone: GMJENa0039K09_R, 3'end, cultivar: ENREI.
LB023378.1:38-57
TGCTCCACTTCCGACCCCGTTCGGTGTCCG38AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
Soybean clone JCVI-FLGm-20O10 unknown mRNA.
BT096155.1:183-202
TGCTCCACTTCCGACCCCGTTCGGTGTCCG183AAAGCACCCAGAAAGAAGCACCTGAAGCGGTTCTCGGAGAAGAAGAAGAA
Glycine max cultivar Williams 82 chromosome 15.
CP126440.1:55083509-55083528
TGCTCCACTTCCGACCCCGTTCGGTGTCCG55083509AAAGCACCCAGAAAGAAGCACCCGAAGCGGTTCTCGGAGAAGAAGAAGAA
Cybosia mesomella genome assembly, chromosome: 18.
OX276406.1:23232860-23232879
GCGAAAGCGCGGACGGCCGGCATATCACTC23232860AAAGCACCCAGAAAGAAGCACACGGACTCTGAAGCTGACGTCAGGAACAT
Heterocephalus glaber genome assembly, chromosome: 20.
OX090928.1:23153824-23153843
AGTTGTGCCGAGTGTCCTGGACTGCTTCGG23153824TGCTTCTTTCTGGGTGCTTTGGGTTTCCAGGAAAATCCAGCTCTCGCATT
Heterocephalus glaber genome assembly, chromosome: 14.
OX090954.1:3837617-3837636
GATACAGAGGGGTGACAGTCCTTTAATTCT3837617TGCTTCTTTCTGGGTGCTTTCTCAGAGTGCTTGTTGTAGCCACTCCCCTA
Heterocephalus glaber genome assembly, chromosome: 18.
OZ001083.1:40871039-40871058
AGTTGTGCCGAGTGTCCTGGACTGCTTCGG40871039TGCTTCTTTCTGGGTGCTTTGGGTTTCCAGGAAAATCCAGCTCTCGCATT
Heterocephalus glaber genome assembly, chromosome: 18.
OZ001126.1:42600354-42600373
AGTTGTGCCGAGTGTCCTGGACTGCTTCGG42600354TGCTTCTTTCTGGGTGCTTTGGGTTTCCAGGAAAATCCAGCTCTCGCATT
Larus fuscus genome assembly, chromosome: 3.
OZ010755.1:54761540-54761559
TCACTGAGGTGAGGTTTAATGGCTTACTCT54761540TGCTTCTTTCTGGGTGCTTTTGTGGACCTGAACTTGAATGTTCTTGTGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAGCACCCAGAAAGAAGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGCACCCAGAAAGAAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.554 | 0.545 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGCACCCAGAAAGAAGCA&k=0&no_gap=0&offset=0&limit=50
0.703 | 0.149 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTTCTTTCTGGGTGCTTT&k=0&no_gap=0&offset=0&limit=28
0.706 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).