GGGenome | Results

2025-04-08 15:39:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

010420AASA005379HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA005379, mRNA sequence.
EB124445.1:210-230

TCGCATTAACTAAACACAAGGGCATGCATG210AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

010425AASA007099HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA007099, mRNA sequence.
EB125436.1:208-228

TCGCATTAACTAAACACAAGGGCATGCATG208AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

fl_01G02_AG8 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254891.1:36-56

TCGCATTAACTAAACACAAGGGCATGCATG36AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

fl_06H11_BA8 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254903.1:36-56

TCGCATTAACTAAACACAAGGGCATGCATG36AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

fl_04A04_BB1 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254906.1:36-56

TCGCATTAACTAAACACAAGGGCATGCATG36AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTG

Mdfrs3136G01.g1 Apple_EST_Mdfrs Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO518449.1:154-174

TCGCATTAACTAAACACAAGGGCATGCATG154AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

Mdfrt3029I22_e8185.g1 Mdfrt Malus domestica cDNA 5', mRNA sequence.
GO560292.1:232-252

TCGCATTAACTAAACACAAGGGCATGCATG232AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

Mdfws2071I04_e23440.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO568857.1:232-252

TCGCATTAACTAAACACAAGGGCATGCATG232AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:2974766-2974786

TCGCATTAACTAAACACAAGGGCATGCATG2974766AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:3447037-3447057

TCGCATTAACTAAACACAAGGGCATGCATG3447037AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:2911662-2911682

TCGCATTAACTAAACACAAGGGCGTGCATG2911662AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:3306193-3306213

CATCGCATTAACTAAACACGGGCATGCATG3306193AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

Malus x robusta genome assembly, chromosome: 2.
OY720326.1:3049600-3049620

TCGCATTAACTAAACACAAGGGCATGCATG3049600AAAGCAGGCCATTCCACTATGAAATTATTTAATTACTTAACCATACTTTTT

Sequence 12 from patent US 8563805.
HJ498226.1:1299-1319

AAAAAGTATGGTTAAGTAATTAAATAATTT1299CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAA

Sequence 24 from patent US 8563805.
HJ498235.1:1801-1821

AAAAAGTATGGTTAAGTAATTAAATAATTT1801CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAA

Sequence 12 from patent US 9580723.
KH601206.1:1299-1319

AAAAAGTATGGTTAAGTAATTAAATAATTT1299CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAA

Sequence 24 from patent US 9580723.
KH601215.1:1801-1821

AAAAAGTATGGTTAAGTAATTAAATAATTT1801CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAA

Sequence 12 from patent US 10227602.
MM770333.1:1299-1319

AAAAAGTATGGTTAAGTAATTAAATAATTT1299CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAA

Sequence 24 from patent US 10227602.
MM770342.1:1801-1821

AAAAAGTATGGTTAAGTAATTAAATAATTT1801CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAA

Sequence 12 from patent US 11359205.
OO278218.1:1299-1319

AAAAAGTATGGTTAAGTAATTAAATAATTT1299CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAA

Sequence 24 from patent US 11359205.
OO278227.1:1801-1821

AAAAAGTATGGTTAAGTAATTAAATAATTT1801CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAA

Mdfr3002o11.y1 Mdfr Malus domestica cDNA clone Mdfr3002o11 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CN994203.2:388-408

AAAAAGTATGGTTAAGTAATTAAATAATTT388CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTT

Mdfr3001j17.y1 Mdfr Malus domestica cDNA clone Mdfr3001j17 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CN995603.2:151-171

AAAAAGTATGGTTAAGTAATTAAATAATTT151CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfw2059e19.y1 Mdfw Malus domestica cDNA clone Mdfw2059e19 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO052705.1:224-244

AAAAAGTATGGTTAAGTAATTAAATAATTT224CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfr3016m23.y1 Mdfr Malus domestica cDNA clone Mdfr3016m23 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO065834.2:224-244

AAAAAGTATGGTTAAGTAATTAAATAATTT224CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3029i22.y1 Mdfrt Malus domestica cDNA clone Mdfrt3029i22 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO068232.1:151-171

AAAAAGTATGGTTAAGTAATTAAATAATTT151CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfr3008l03.y3 Mdfr Malus domestica cDNA clone Mdfr3008l03 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO416746.1:196-216

AAAAAGTATGGTTAAGTAATTAAATAATTT196CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfr3011o03.y2 Mdfr Malus domestica cDNA clone Mdfr3011o03 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO416920.1:139-159

AAAAAGTATGGTTAAGTAATTAAATAATTT139CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfr3012c09.y2 Mdfr Malus domestica cDNA clone Mdfr3012c09 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO417201.1:273-293

AAAAAGTATGGTTAAGTAATTAAATAATTT273CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3038j18.y1 Mdfrt Malus domestica cDNA clone Mdfrt3038j18 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO541104.1:214-234

AAAAAGTATGGTTAAGTAATTAAATAATTT214CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3039m15.y1 Mdfrt Malus domestica cDNA clone Mdfrt3039m15 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO541210.1:198-218

AAAAAGTATGGTTAAGTAATTAAATAATTT198CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfr3019f13.y1 Mdfr Malus domestica cDNA clone Mdfr3019f13 5', mRNA sequence.
CO722331.1:48-68

AAAAAGTATGGTTAAGTAATTAAATAATTT48CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfr3022l05.y1 Mdfr Malus domestica cDNA clone Mdfr3022l05 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO753089.1:102-122

AAAAAGTATGGTTAAGTAATTAAATAATTT102CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3060o22.y1 Mdfrt Malus domestica cDNA clone Mdfrt3060o22 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO899443.1:177-197

AAAAAGTATGGTTAAGTAATTAAATAATTT177CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3056m10.y1 Mdfrt Malus domestica cDNA clone Mdfrt3056m10 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CO901972.1:177-197

AAAAAGTATGGTTAAGTAATTAAATAATTT177CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3085g09.y1 Mdfrt Malus domestica cDNA clone Mdfrt3085g09 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CV084409.1:285-305

AAAAAGTATGGTTAAGTAATTAAATAATTT285CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3089b12.y1 Mdfrt Malus domestica cDNA clone Mdfrt3089b12 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CV128682.1:367-387

AAAAAGTATGGTTAAGTAATTAAATAATTT367CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3074p04.y1 Mdfrt Malus domestica cDNA clone Mdfrt3074p04 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CV150334.1:143-163

AAAAAGTATGGTTAAGTAATTAAATAATTT143CATAGTGGAATGGCCTGCTTTCAT

Mdfrt3106o12.y1 Mdfrt Malus domestica cDNA clone Mdfrt3106o12 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CV627663.1:226-246

AAAAAGTATGGTTAAGTAATTAAATAATTT226CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGATAATGCGA

Mdfrt3101h14.y1 Mdfrt Malus domestica cDNA clone Mdfrt3101h14 5', mRNA sequence.
CV629657.1:89-109

AAAAAGTATGGTTAAGTAATTAAATAATTT89CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3102c11.y1 Mdfrt Malus domestica cDNA clone Mdfrt3102c11 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CV629719.1:226-246

AAAAAGTATGGTTAAGTAATTAAATAATTT226CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3102f11.y1 Mdfrt Malus domestica cDNA clone Mdfrt3102f11 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CV629882.1:434-454

AAAAAGTATGGTTAAGTAATTAAATAATTT434CATAGTGGAATGGCCTGCTTTC

Mdfrt3098g22.y1 Mdfrt Malus domestica cDNA clone Mdfrt3098g22 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CV632011.1:367-387

AAAAAGTATGGTTAAGTAATTAAATAATTT367CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3110f07.y1 Mdfrt Malus domestica cDNA clone Mdfrt3110f07 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CV657448.1:226-246

AAAAAGTATGGTTAAGTAATTAAATAATTT226CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrt3111g07.y1 Mdfrt Malus domestica cDNA clone Mdfrt3111g07 5' similar to TR:O81103 O81103 POLYPHENOL OXIDASE PRECURSOR, mRNA sequence.
CV657604.1:434-454

AAAAAGTATGGTTAAGTAATTAAATAATTT434CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

010813AASB005503HT (AASB) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASB005503, mRNA sequence.
EB141473.1:625-645

AAAAAGTATGGTTAAGTAATTAAATAATTT625CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

fl_07C07 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254977.1:145-165

AAAAAGTATGGTTAAGTAATTAAATAATTT145CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

fl_03G01_CE7 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD255002.1:396-416

AAAAAGTATGGTTAAGTAATTAAATAATTT396CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

fl_01F12_CC5 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD255061.1:157-177

AAAAAGTATGGTTAAGTAATTAAATAATTT157CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfwj2075H23.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO505656.1:442-462

AAAAAGTATGGTTAAGTAATTAAATAATTT442CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfwb2091G06.g1 Apple_EST_Mdfwb Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO507581.1:523-543

AAAAAGTATGGTTAAGTAATTAAATAATTT523CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfwf2089O17.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO513854.1:374-394

AAAAAGTATGGTTAAGTAATTAAATAATTT374CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrs3136P01.g1 Apple_EST_Mdfrs Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO518636.1:118-138

AAAAAGTATGGTTAAGTAATTAAATAATTT118CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrs3142E11.g1 Apple_EST_Mdfrs Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO519857.1:573-593

AAAAAGTATGGTTAAGTAATTAAATAATTT573CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrs3138L13.g1 Apple_EST_Mdfrs Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO520373.1:330-350

AAAAAGTATGGTTAAGTAATTAAATAATTT330CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrb3149K04.g1 Apple_EST_Mdfrb Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO521977.1:544-564

AAAAAGTATGGTTAAGTAATTAAATAATTT544CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrg3155I08.g1 Apple_EST_Mdfrg Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO523695.1:301-321

AAAAAGTATGGTTAAGTAATTAAATAATTT301CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Mdfrg3156N03.g1 Apple_EST_Mdfrg Malus domestica cDNA 5' similar to gb|AAC28935.1| polyphenol oxidase precursor [Prunus armeniaca], mRNA sequence.
GO524139.1:223-243

AAAAAGTATGGTTAAGTAATTAAATAATTT223CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:43416055-43416075

AAAAAGTATGGTTAAGTAATTAAATAATTT43416055CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:40036169-40036189

AAAAAGTATGGTTAAGTAATTAAATAATTT40036169CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Malus x domestica polyphenol oxidase IIa (PPOIIa) gene, complete cds.
JQ388479.1:2184-2204

AAAAAGTATGGTTAAGTAATTAAATAATTT2184CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTA

Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:43770227-43770247

AAAAAGTATGGTTAAGTAATTAAATAATTT43770227CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Malus domestica genome assembly, chromosome: 5.
OU696681.1:43207053-43207073

AAAAAGTATGGTTAAGTAATTAAATAATTT43207053CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Malus domestica genome assembly, chromosome: 5.
OU744546.1:42593338-42593358

AAAAAGTATGGTTAAGTAATTAAATAATTT42593338CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Malus domestica genome assembly, chromosome: 5.
OU744957.1:43123206-43123226

AAAAAGTATGGTTAAGTAATTAAATAATTT43123206CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Malus domestica genome assembly, chromosome: 5.
OU744995.1:44065946-44065966

AAAAAGTATGGTTAAGTAATTAAATAATTT44065946CATAGTGGAATGGCCTGCTTTCATGCATGCCCTTGTGTTTAGTTAATGCGA

Pyrus communis genome assembly, chromosome: 2.
OY757069.1:2614506-2614526

ATTAAGTATGGTTAAGTAATTAAATAATTT2614506CATAGTGGAATGGCCTGCTTTCATGCATGCATGCTATGCATGTCCTTGTGT

Perizoma affinitatum genome assembly, chromosome: 24.
OY560208.1:4938662-4938682

CTTTAATAGGTCACAGTTGATGTCTTACCT4938662CATAGTGGAATGGCCTGCTTTAAAATTAAAAATTTAATTCAATTAATCGAT

Data Export:

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Debug Info:

0.008 | 0.008 | search_start;
0.792 | 0.784 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGCAGGCCATTCCACTATG&k=0&no_gap=0&offset=0&limit=50
2.962 | 2.169 | search_minus_done; http://172.18.8.135:50400/match?q=CATAGTGGAATGGCCTGCTTT&k=0&no_gap=0&offset=0&limit=37
2.997 | 0.035 | cgi_end;

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