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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:34:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 8590 from patent US 7960612.
GY266637.1:208-230
AGTGTCAAAGCATCTATTGAGAGGTACAAG208AAAGCATGTTCAGATTCTTCTGGAGGTGGATCCACTTCTGGGGCTAATGCTCA
Sequence 13336 from patent US 8030546.
GY465561.1:208-230
AGTGTCAAAGCATCTATTGAGAGGTACAAG208AAAGCATGTTCAGATTCTTCTGGAGGTGGATCCACTTCTGGGGCTAATGCTCA
Sequence 13336 from patent US 10597667.
MO976714.1:208-230
AGTGTCAAAGCATCTATTGAGAGGTACAAG208AAAGCATGTTCAGATTCTTCTGGAGGTGGATCCACTTCTGGGGCTAATGCTCA
Lotus japonicus DNA, clone:LjB01a23_r.
AG219256.1:208-230
AGTGTCAAAGCATCTATTGAGAGGTACAAG208AAAGCATGTTCAGATTCTTCTGGAGGTGGATCCACTTCTGGGGCTAATGCTCA
mte1-51B1RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR324355.1:119-141
AGTGTCAAAGCATCAATTGAGAGGTACAAG119AAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATGTTCA
Medicago truncatula clone mth2-76i7, complete sequence.
AC153460.24:84698-84720
AGTGTCAAAGCATCAATTGAGAGGTACAAG84698AAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATGTTCA
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:76075864-76075886
AGTGTCAAAGCATCTATTGAGAGGTACAAG76075864AAAGCATGTTCAGATTCTTCTGGAGGTGGATCCACTTCTGGGGCTAATGCTCA
Lotus corniculatus var. japonicus MADS box protein AGb mRNA, partial cds.
AY770403.1:208-230
AGTGTCAAAGCATCTATTGAGAGGTACAAG208AAAGCATGTTCAGATTCTTCTGGAGGTGGATCCACTTCTGGGGCTAATGCTCA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:55226672-55226694
AGTGTGAAAGCATCTATTGAGAGGTACAAG55226672AAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATACTCA
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:50817724-50817746
AGTGTGAAAGCATCTATTGAGAGGTACAAG50817724AAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATACTCA
Medicago truncatula cultivar Jemalong A17 MADS-box transcription factor AGAMOUSb (AGb) mRNA, complete cds.
KF159805.1:305-327
AGTGTCAAAGCATCAATTGAGAGGTACAAG305AAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATGTTCA
Medicago truncatula AGAMOUSb (AGb) gene, complete cds.
KJ470634.1:3266-3288
AGTGTCAAAGCATCAATTGAGAGGTACAAG3266AAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATGTTCA
Vuralia turcica floral homeotic protein AGAMOUS mRNA, complete cds.
KT760579.1:398-420
AGTGTCAAAGCAACTATTGAGAGGTACAAG398AAAGCATGTTCAGATTCTTCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCA
Medicago arabica genome assembly, chromosome: 1.
OX326964.1:61684560-61684582
AGTGTCAAAGCATCAATTGAGAGGTACAAG61684560AAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCCGAGTCTAATGTTCA
Inga laurina genome assembly, chromosome: 1.
OY979701.1:65592844-65592866
AGTGTGAAGGCAACAATAGAGAGGTACAAG65592844AAAGCATGTTCAGATTCTTCTGGTGCTGGATCCACTTCTGAAGCTAATGCTCA
SSH_Chickpea pod wall_JMV_26 Cicer arietinum pod wall subtractive cDNA library Cicer arietinum cDNA, mRNA sequence.
JZ923225.1:634-656
TGAGCATTAGTCTCAGAAGCAGATTTGCAA634CCAGAAGAATCTGAACATGCTTTCTTGT
mte1-83K1RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR348804.1:444-466
TGAACATTAGACTCAGAAGCTGATTTAGCA444CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATTGATGCTTTGACACT
Medicago truncatula clone mth2-30e7, complete sequence.
AC137837.4:34355-34377
TGAACATTAGACTCAGAAGCTGATTTAGCA34355CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATTGATGCTTTGACACT
Lotus japonicus genomic DNA, chromosome 4, clone: LjT41M05, TM0404.
AP006697.1:94133-94155
TGAGCATTAGCCCCAGAAGTGGATCCACCT94133CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATAGATGCTTTGACACT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-16.
CP023128.1:5445583-5445605
TGAGCATTAGCCTCAGAAGCAGATCCAGCA5445583CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATAGTTGCTTTGACACT
Cicer arietinum chromosome Ca6.
CP039336.1:9596650-9596672
TGAGCATTAGTCTCAGAAGCAGATTTGCAA9596650CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATAGATGCTTTGACACT
Cicer arietinum chromosome Ca6.
CP040771.1:9596639-9596661
TGAGCATTAGTCTCAGAAGCAGATTTGCAA9596639CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATAGATGCTTTGACACT
Trifolium subterraneum genome assembly, chromosome: 1.
OX637461.1:8398321-8398343
TGAACATTAGACTCAGAAGCTGATTTAGCA8398321CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATAGATGCTTTCACACT
Trifolium dubium genome assembly, chromosome: 10.
OX638071.1:6011208-6011230
TGAACATTAGACTCAGAAGCTGATTTAGCA6011208CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATAGATGCTTTCACACT
Trifolium dubium genome assembly, chromosome: 14.
OX638075.1:5604450-5604472
TGAACATTAGACTCAGAAGCTGATTTAGCA5604450CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATAGATGCTTTCACACT
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:9321150-9321172
TGAGTATTAGACTCAGAAGCTGATTTAGCA9321150CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATAGATGCTTTCACACT
Medicago lupulina genome assembly, chromosome: 4.
OY283142.1:8579346-8579368
TGAACATTAGACTCAGAAGCTGATTTAGCA8579346CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCAATTGAGGCCTTGACACT
Inga oerstediana genome assembly, chromosome: 2.
OY723400.1:24045731-24045753
TGAGCATTAGCTTCAGAAGTGGATCCAGCA24045731CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCTATTGTTGCCTTCACACT
Inga leiocalycina genome assembly, chromosome: 2.
OY725321.1:22016880-22016902
TGAGCATTAGCTTCAGAAGTGGATCCAGCA22016880CCAGAAGAATCTGAACATGCTTTCTTGTACCTCTCTATTGTTGCCTTCACACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAGCATGTTCAGATTCTTCTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGCATGTTCAGATTCTTCTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.263 | 0.254 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGCATGTTCAGATTCTTCTGG&k=0&no_gap=0&offset=0&limit=50
0.479 | 0.216 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGAAGAATCTGAACATGCTTT&k=0&no_gap=0&offset=0&limit=35
0.488 | 0.009 | cgi_end;

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