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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 06:00:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH042_10617m, 5' end sequence.
AB450718.1:3-24
CC3AAAGCCGTACATTAGGCAAACCCGCGCATCTCTCTCGCTCCTCCCCCTTTCT
010829ABCA002010HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus domestica cDNA clone ABCA002010, mRNA sequence.
EB144939.1:13-34
TCTCCCTCCTCC13AAAGCCGTACATTAGGCAAACCCGCGCATCTCTCTCGCTCCTCCGCCCCCCT
Prunus dulcis DNA, unplaced-scaffold_974.
AP021311.1:9846-9867
CCTTGAGTTTTGAAACAGTCTCTCTCCCTC9846AAAGCCGTACATTAGGCAAACCAGCGCATCTCTCTCGCCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141965.1:24835550-24835571
TTAAATTTTGAAACAGTCTCTCCCTCCTCC24835550AAAGCCGTACATTAGGCAAACCCGCGCATCTCTCTCGCTCCTCCCTCTTTCT
Malus hybrid cultivar cultivar Royalty chromosome 13.
CP141982.1:25517142-25517163
TTAAATTTTGAAACAGTCTCTCCCTCCTCC25517142AAAGCCGTACATTAGGCAAACCCGCGCATCTCTCTCGCTCCTCCCTCTTTCT
Pyrus communis genome assembly, chromosome: 6.
OY757073.1:17184757-17184778
TTAAATTTTGAAACAGTCCCTCCCTCCTCC17184757AAAGCCGTACATTAGGCAAACCCGCGCATCTCTCTCGCTTCTCCCCCTTTCT
Prunus dulcis DNA, pseudomolecule Pd01.
AP019297.1:18271973-18271994
GAGAGAGAGAGAGGGCGAGAGAGATGCGCT18271973GGTTTGCCTAATGTACGGCTTTGAGGGAGAGAGACTGTTTCAAAACTCAAGG
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141922.1:15941131-15941152
AGAAAGAGGGAGGAGCGAGAGAGATGCGCG15941131GGTTTGCCTAATGTACGGCTTTGGAGGAGGGAGAGACTGTTTCAAAATTTAA
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:16686614-16686635
AAAAGGGGAGAGGAGCGAGAGGGAAGCGCG16686614GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGGCTGTTTCAAAAATT
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:16775723-16775744
GAGAGAGAGAGAGAGAGAGAGGGAAGCGCG16775723GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGGCTGTTTCAAAAATT
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:16946525-16946546
GAGAGGGGAGAGGAGAGAGAGGGAAGCGCG16946525GGTTTGCCTAATGTACGGCTTTGGAGGAGAGACGGGCTGTTTCAAAAATTAA
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:17309792-17309813
AAAAGGGGAGAGGAGCGAGAGGGAAGCGCG17309792GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGGCTGTTTCAAAAATT
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:16864939-16864960
AAAAGGGGAGAGGAGAGAGAGGGAAGCGCG16864939GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGCCTGTTTCAAAAATT
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143387.1:14675474-14675495
AGAAAGGGGGAGGAGCGAGAGAGATGCGCG14675474GGTTTGCCTAATGTACGGCTTTGGAGGAGGGAGAGACTGTTTCAAAATTTAA
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:15841851-15841872
AAAAGGGGAGAGGAGCGAGAGGGAAGCGCG15841851GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGGCTGTTTCAAAAATT
Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:16538326-16538347
AGAAAGGAGGAGGAGCGAGAGAGATGCGCG16538326GGTTTGCCTAATGTACGGCTTTGGAGGAGGGAGAGACTGTTTCAAAATTTAA
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:16845250-16845271
AAAAGGGGAGAGGATAGAGAGGGAAGCGCG16845250GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGGCTGTTTCAAAAATT
Malus domestica genome assembly, chromosome: 16.
OU696692.1:17208555-17208576
AAAAGGGGAGAGGAGAGAGAGGGAAGCGCG17208555GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGCCTGTTTCAAAAATT
Malus domestica genome assembly, chromosome: 13.
OU744554.1:16560041-16560062
AGAAAGAGGGAGGAGCGAGAGAGATGCGCG16560041GGTTTGCCTAATGTACGGCTTTGGAGGAGGGAGAGACTGTTTCAAAATTTAA
Malus domestica genome assembly, chromosome: 16.
OU744557.1:16914506-16914527
GAGAGGGGAGAGGAGAGAGAGGGAAGCGCG16914506GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGGCTGTTTCAAAAATT
Malus domestica genome assembly, chromosome: 13.
OU744965.1:16865047-16865068
AGAAAGGAGGAGGAGCGAGAGAGATGCGCG16865047GGTTTGCCTAATGTACGGCTTTGGAGGAGGGAGAGACTGTTTCAAAATTTAA
Malus domestica genome assembly, chromosome: 16.
OU744968.1:17246487-17246508
GAGAGGGGAGAGGAGAGAGAGGGAAGCGCG17246487GGTTTGCCTAATGTACGGCTTTGGAGGAGAGACGGGCTGTTTCAAAAATTAA
Malus domestica genome assembly, chromosome: 13.
OU745003.1:16768503-16768524
AGAAAGGAGGAGGAGCGAGAGAGATGCGCG16768503GGTTTGCCTAATGTACGGCTTTGGAGGAGGGAGAGACTGTTTCAAAATTTAA
Malus domestica genome assembly, chromosome: 16.
OU745006.1:17286713-17286734
AAAAGGGGAGAGGAGAGAGAGGGAAGCGCG17286713GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGCCTGTTTCAAAAATT
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:17215937-17215958
AAAAGGGGAGAGGAGCGAGAGGGAAGCGCG17215937GGTTTGCCTAATGTACGGCTTTGGAGGAGAGAGACGGGCTGTTTCAAAAATT
Malus x robusta genome assembly, chromosome: 9.
OY720333.1:16446486-16446507
AGAAAGGAGGAGGAGCGAGAGAGATGCGCG16446486GGTTTGCCTAATGTACGGCTTTGGAGGAGGGAGAGACTGTTTCAAAATTTAA
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:16671635-16671656
TAGTGGGGAGATGAGTGAGAGAGAAGCGCG16671635GGTTTGCCTAATGTACGGCTTTGGAGGAGAAAGACAGGTTGTTTCAAAAATT
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:12746097-12746118
AAAAGGGGAGAGGAGCGAGAGAAAAGCGCG12746097GGTTTGCCTAATGTACGGCTTTAGAGGAGAGAGACAGGCTGTTTCAAAAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAAGCCGTACATTAGGCAAACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAGCCGTACATTAGGCAAACC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.196 | 0.187 | search_plus_done; http://172.18.8.135:50400/match?q=AAAGCCGTACATTAGGCAAACC&k=0&no_gap=0&offset=0&limit=50
0.249 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTTGCCTAATGTACGGCTTT&k=0&no_gap=0&offset=0&limit=44
0.263 | 0.014 | cgi_end;

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